Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0605 | ATGGATGACCCCTCCACAAATTTCTTTACAGGTCTCTTCAAATTCAACCCGCTCTACCATTACCCTTCTCCACCTTCAAACCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCACCAGCCTTTCTACTCTCACAATTTCTTCACAAACCAAAACCATCACTACTCTTTCCAAACACCCCCGTCTTCTCCTCCTCTTCGGCAAGCCCTTCCGCTCCTCAGCCGCTTCAGGTCACCGAAACAAGCGGCCGAGGACGAAGAAGATCCTCGGCAAGATCAAGATCTTTACTCTTGCAGTGCTTCAGCCATGGATATTGATAAGATTAATAGTAGCATCAGAAAGCAGAAGGAAGATGATGGAGATGAAGAGGAGATTGAGGGTTCTGTTACTGTTGCACTTCATATAGGGTTACCTAGCCCTAGTGCTTCTGAAATGGCTTCTCTCCTGCTATCTGCTGCTAATTCTTCCTCTGAAAACAATGAAAAAGATGATAATGAAGATCAAGATCATTCTGGGTATCCTATTACCAGACTCAACAAGGGACAGTATTGGATCCCTACCCCTTCTCAAATTCTCATTGGCCCTACACAGTTCTCTTGTCCTGTTTGCTACAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGTCATGGATCTCAGTATAGAAGAGGACCTGAGTCTCTAAGAGGCACACAGCCCACAGGAATGCTGAGGCTCCCTTGCTATTGCTGCTCACCAGGATGCAGAAACAACATTGACCATCCAAGAGCAAAGCCACTAAAAGATTTCAGGACACTACAAACCCATTACAAGAGGAAACATGGGATAAAGCCCTTCATGTGCAGAAAATGTGGAAAGGCATTTGCTGTGAGAGGTGATTGGAGAACCCATGAGAAGAACTGTGGTAAGCTTTGGTATTGCATTTGTGGGTCTGATTTTAAGCATAAGAGATCTTTGAAAGACCATATCAAGGCCTTTGGAAATGGACATGCTGCTTATAATGCTGATGGGTTTGAAGAAGATGATGAGCCAGCTTCTGAAGTAGAACAAGACAATGATTCAAACCATTGA | 1086 | 44.84 | MDDPSTNFFTGLFKFNPLYHYPSPPSNPPPPPPPPPPPLPHQPFYSHNFFTNQNHHYSFQTPPSSPPLRQALPLLSRFRSPKQAAEDEEDPRQDQDLYSCSASAMDIDKINSSIRKQKEDDGDEEEIEGSVTVALHIGLPSPSASEMASLLLSAANSSSENNEKDDNEDQDHSGYPITRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNADGFEEDDEPASEVEQDNDSNH | 361 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14092067 | 14094351 | + | evm.model.ptg000018l.10 | HCH11g0605 | 554072 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0605 | 361 | SMART | c2h2final6 | 284 | 304 | IPR013087 | - | |
HCH11g0605 | 361 | SMART | c2h2final6 | 200 | 222 | IPR013087 | - | |
HCH11g0605 | 361 | MobiDBLite | consensus disorder prediction | 80 | 99 | - | - | |
HCH11g0605 | 361 | MobiDBLite | consensus disorder prediction | 21 | 43 | - | - | |
HCH11g0605 | 361 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 283 | 307 | - | - | |
HCH11g0605 | 361 | MobiDBLite | consensus disorder prediction | 161 | 175 | - | - | |
HCH11g0605 | 361 | SUPERFAMILY | beta-beta-alpha zinc fingers | 196 | 222 | IPR036236 | - | |
HCH11g0605 | 361 | MobiDBLite | consensus disorder prediction | 19 | 47 | - | - | |
HCH11g0605 | 361 | FunFam | zinc finger protein WIP2-like | 199 | 222 | - | - | |
HCH11g0605 | 361 | MobiDBLite | consensus disorder prediction | 154 | 177 | - | - | |
HCH11g0605 | 361 | Gene3D | Classic Zinc Finger | 261 | 340 | - | - | |
HCH11g0605 | 361 | FunFam | Zinc finger protein WIP2 | 253 | 335 | - | - | |
HCH11g0605 | 361 | MobiDBLite | consensus disorder prediction | 341 | 361 | - | - | |
HCH11g0605 | 361 | Pfam | Zinc finger, C2H2 type | 200 | 219 | IPR013087 | - | |
HCH11g0605 | 361 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 202 | 222 | IPR013087 | - | |
HCH11g0605 | 361 | Gene3D | Classic Zinc Finger | 199 | 222 | - | - | |
HCH11g0605 | 361 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 200 | 227 | IPR013087 | - | |
HCH11g0605 | 361 | SUPERFAMILY | beta-beta-alpha zinc fingers | 266 | 304 | IPR036236 | - | |
HCH11g0605 | 361 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 284 | 304 | IPR013087 | - | |
HCH11g0605 | 361 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 28 | 44 | - | - | |
HCH11g0605 | 361 | PANTHER | ZINC FINGER PROTEIN WIP2 | 50 | 359 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0605 | HCH-Chr11:14092067 | HCH2g1387 | HCH-Chr2:55650887 | 1.10E-111 | dispersed | |
HCH10g1249 | HCH-Chr10:44385413 | HCH11g0605 | HCH-Chr11:14092067 | 3.50E-89 | transposed | |
HCH11g0605 | HCH-Chr11:14092067 | HCH9g1110 | HCH-Chr9:13492435 | 5.10E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32575 | None | None | None | None | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0605 | - | - | - | 0.0 |