Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0605 ATGGATGACCCCTCCACAAATTTCTTTACAGGTCTCTTCAAATTCAACCCGCTCTACCATTACCCTTCTCCACCTTCAAACCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCACCAGCCTTTCTACTCTCACAATTTCTTCACAAACCAAAACCATCACTACTCTTTCCAAACACCCCCGTCTTCTCCTCCTCTTCGGCAAGCCCTTCCGCTCCTCAGCCGCTTCAGGTCACCGAAACAAGCGGCCGAGGACGAAGAAGATCCTCGGCAAGATCAAGATCTTTACTCTTGCAGTGCTTCAGCCATGGATATTGATAAGATTAATAGTAGCATCAGAAAGCAGAAGGAAGATGATGGAGATGAAGAGGAGATTGAGGGTTCTGTTACTGTTGCACTTCATATAGGGTTACCTAGCCCTAGTGCTTCTGAAATGGCTTCTCTCCTGCTATCTGCTGCTAATTCTTCCTCTGAAAACAATGAAAAAGATGATAATGAAGATCAAGATCATTCTGGGTATCCTATTACCAGACTCAACAAGGGACAGTATTGGATCCCTACCCCTTCTCAAATTCTCATTGGCCCTACACAGTTCTCTTGTCCTGTTTGCTACAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGTCATGGATCTCAGTATAGAAGAGGACCTGAGTCTCTAAGAGGCACACAGCCCACAGGAATGCTGAGGCTCCCTTGCTATTGCTGCTCACCAGGATGCAGAAACAACATTGACCATCCAAGAGCAAAGCCACTAAAAGATTTCAGGACACTACAAACCCATTACAAGAGGAAACATGGGATAAAGCCCTTCATGTGCAGAAAATGTGGAAAGGCATTTGCTGTGAGAGGTGATTGGAGAACCCATGAGAAGAACTGTGGTAAGCTTTGGTATTGCATTTGTGGGTCTGATTTTAAGCATAAGAGATCTTTGAAAGACCATATCAAGGCCTTTGGAAATGGACATGCTGCTTATAATGCTGATGGGTTTGAAGAAGATGATGAGCCAGCTTCTGAAGTAGAACAAGACAATGATTCAAACCATTGA 1086 44.84 MDDPSTNFFTGLFKFNPLYHYPSPPSNPPPPPPPPPPPLPHQPFYSHNFFTNQNHHYSFQTPPSSPPLRQALPLLSRFRSPKQAAEDEEDPRQDQDLYSCSASAMDIDKINSSIRKQKEDDGDEEEIEGSVTVALHIGLPSPSASEMASLLLSAANSSSENNEKDDNEDQDHSGYPITRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNADGFEEDDEPASEVEQDNDSNH 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14092067 14094351 + evm.model.ptg000018l.10 HCH11g0605 554072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0605 361 SMART c2h2final6 284 304 IPR013087 -
HCH11g0605 361 SMART c2h2final6 200 222 IPR013087 -
HCH11g0605 361 MobiDBLite consensus disorder prediction 80 99 - -
HCH11g0605 361 MobiDBLite consensus disorder prediction 21 43 - -
HCH11g0605 361 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 283 307 - -
HCH11g0605 361 MobiDBLite consensus disorder prediction 161 175 - -
HCH11g0605 361 SUPERFAMILY beta-beta-alpha zinc fingers 196 222 IPR036236 -
HCH11g0605 361 MobiDBLite consensus disorder prediction 19 47 - -
HCH11g0605 361 FunFam zinc finger protein WIP2-like 199 222 - -
HCH11g0605 361 MobiDBLite consensus disorder prediction 154 177 - -
HCH11g0605 361 Gene3D Classic Zinc Finger 261 340 - -
HCH11g0605 361 FunFam Zinc finger protein WIP2 253 335 - -
HCH11g0605 361 MobiDBLite consensus disorder prediction 341 361 - -
HCH11g0605 361 Pfam Zinc finger, C2H2 type 200 219 IPR013087 -
HCH11g0605 361 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
HCH11g0605 361 Gene3D Classic Zinc Finger 199 222 - -
HCH11g0605 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
HCH11g0605 361 SUPERFAMILY beta-beta-alpha zinc fingers 266 304 IPR036236 -
HCH11g0605 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 304 IPR013087 -
HCH11g0605 361 SUPERFAMILY Formin homology 2 domain (FH2 domain) 28 44 - -
HCH11g0605 361 PANTHER ZINC FINGER PROTEIN WIP2 50 359 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0605 HCH-Chr11:14092067 HCH2g1387 HCH-Chr2:55650887 1.10E-111 dispersed
HCH10g1249 HCH-Chr10:44385413 HCH11g0605 HCH-Chr11:14092067 3.50E-89 transposed
HCH11g0605 HCH-Chr11:14092067 HCH9g1110 HCH-Chr9:13492435 5.10E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32575 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0605 - - - 0.0