Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0647 ATGTCTGCTGTGCTTTTTTTGGCTCTCTCATTCTTGTACGTTGGAATTCACAACACCTGCTCATACACAGACCACAACGATTTTGCAATCCTCCTATCTTTAAAAGAGGAATGGAAAAATACACCACCAACATGGGGAACATCAGCTGATGCATGTGGGAACTGGGAAGGAGTGGCATGCAACCATTCTAGAGTAACTGAATTAAAATTACCATCTATGGGTCTTCAAGGTACTCTTACTGGTGACATTGGTGGCCTCACTGAACTCACAACATTGGACCTGTCATTTAATAAAGATCTCACTGGTTCTCTCACTCCAAGTTTGGGGGATTTGCGTAATTTGAAAATCTTAATCCTTGCTGCCTGTGGTTTGAGTGGTAATATTCCAGAAGAATTGGGCAATCTTACTAACTTGATCTACTTGGCTTTGAACTTAAACAAGTTCACTGGTCATATACCTCCTACTCTGGGCAAACTCTCCAAACTAGTTGTGCTAGACTTTGCTGACAATCAGTTGACTGGACCTCTCCCCGTTTCAACTTTTGAATCGCCTGGTTTGGACCGCCTTCTCGTGGCTAAACACTTTCACTTCAGCAGGAACAAGCTATCAGGTTCCATACCACCAAATCTTTTTAGCTCTGATATGGCATTGATACACATAGTATTTGATGGGAATCAGTTTTCTGGGATTATTCCACCAACCTTAGGACTTGTTAAGAAGCTTGAAGTTCTTCGACTTGATCGTAATTTTCTGACCGGAACCGTCCCATCAAATCTCAACAATCTAACAAATATCAATCAATTGAATTTAGCTCACAATAATCTGACAGGTCCATTGCCAAACCTAACTCAAATGAGTTCACTAAGTTTTGTGGACCTTAGTAACAACTCATTTGAATCATCAACAGCTCCAGATTGGTTCTCAAGCTTACCATCTCTCACCACATTGATCATTGAATATGGATCAATACAAGGATCTGTGCCACAGGGAGTCTTCAGCTTACCACAGATACAACAAATAAGGCTGAAGAACAACGCATTTAGTGAGATATTGAGCATGGGCGACAACATCAACCAAAATCTGGAGCTTATTGATTTGCAAAATAACCAAATTTCCTCATTTACTAGTTCTGGATATAGCAAAACCTTGATGCTTGAAGGAAATCCTGTATGTGATATTGATGGTCACTTAAATGCAAACTATTGCAAGCTTCAACATCTAGCAACAAAGTCCAATTACACCAGCCTCATCAATTGTGAAATTAGATCATGTCCCGTAGGTGGGAAGCAGAACCCTCAAAGCTGCGAATGTCAATATCCATTCGAAGGAACTTTGTACTTTAGAGGACCCTCGTTTAGAGATTTGTCCAATATGACCCTGTTTCGCTTACTGGAAGAGAGTCTTTGCAAGAAACTGGACCTTACTCCGGGTTCAGTTTTTATTGAACATCCTCAGTTTAATAGTGATGACAATCTTTGGATGCAGCTTGCGATGTTTCCACCATCTGGAAAGTATTTCAACAGGTCAGAAATTCAGAGGATTAGTTTTGAATTGAGTCATCAAAATTTCGAGCTTCGTGCAGAGTTTGGGTCGTTCTTTTTCAATGCAGCTCCATATAATTTCTCAGCTGCGGATGAGAGAACTTCCACTTCCATTAGCACTGGTTTGCTGATAGGGATAGCTATTGGATGTGCATTTCTGGTCCTAGGCCTCATTGGAGTTGGAATATATGCAATTAGGCAAAAGAAACGTGCAAAAGATGTCATTGGATTGACTAAGCCATTTGCTTCCTGGGCATCAAGTAAACAAGGTAGTGGAGATGTACCGCAGTTAAAGGGAGCAAGATATTTTTCTTATGGTGAAATTAAAAGTTTCACAAATAATTTCTCCATAAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTTTATAGAGGAATAACTGGGGATGGACAAGTAGTTGCAATTAAAAGAGCAAAGCAAGAATCAATGCAAGGTGGGCTTGAGTTCAAAACAGAAATTGAATTGCTTTCACGAGTTCATCATAAGAATCTTGTCAGCCTGATAGGATTTTGTTTTGAACGAGGTGAACATATCCTTGTTTATGAATTCATGCCTAATGGAACACTTAGAGAGAGCTTATCTGGGAGTTCCGGTGTCTATCTTGATTGGAAAAGAAGACTTCGAGTAGCACTTGGATCTGCTAGAGGATTGGCTTACCTACACGAGCATGCAAATCCTCCTATTATCCATAGAGATATCAAGTCCACAAATATTCTGTTGGATGAATATTTAAATGCAAAGGTCGCGGATTTCGGCTTGTCCAAGCTTGTATTTGACGATGAAAAGGGACATATTTCTACTCAAGTTAAAGGCACGTTGGGTTATTTGGATCCCGGATATTATACTACACAACAATTAACCGAGAAGAGTGATGTGTACAGCTTTGGTGTGGTTATGCTTGAATTGATAACTTCTAAACTTCCAATTGTGAAAGGGAAGTATATAGTCCGAGAAGTGCTTATACTGATAAATAACAATGACCAAGATAACTTGAGGGATATAATGGATGCAACTATCAGAGATGAAATGATGAATCCAATCGGGTTTGGAAGGTTCTTGGAATTGGCTGTAAAATGTGTAGAAGAATCAGCCGCAGATCGTCCAACAATGAGTGAAGTAGTCAAAGAAATTGAAAGCATTTTACAGAATGATGGAATATCCTCATCTACCACAAACTTCGAAACTTTGAAGGGTTCTCCCAAATATCCTAAAATAATATCATACAAAAAAAACGATATCGAGGATGGTAACACTTTTGACTATAGTGGTAGATACACACTTTCAGCCGAAGTGGAACCTAAGTAG 2868 39.54 MSAVLFLALSFLYVGIHNTCSYTDHNDFAILLSLKEEWKNTPPTWGTSADACGNWEGVACNHSRVTELKLPSMGLQGTLTGDIGGLTELTTLDLSFNKDLTGSLTPSLGDLRNLKILILAACGLSGNIPEELGNLTNLIYLALNLNKFTGHIPPTLGKLSKLVVLDFADNQLTGPLPVSTFESPGLDRLLVAKHFHFSRNKLSGSIPPNLFSSDMALIHIVFDGNQFSGIIPPTLGLVKKLEVLRLDRNFLTGTVPSNLNNLTNINQLNLAHNNLTGPLPNLTQMSSLSFVDLSNNSFESSTAPDWFSSLPSLTTLIIEYGSIQGSVPQGVFSLPQIQQIRLKNNAFSEILSMGDNINQNLELIDLQNNQISSFTSSGYSKTLMLEGNPVCDIDGHLNANYCKLQHLATKSNYTSLINCEIRSCPVGGKQNPQSCECQYPFEGTLYFRGPSFRDLSNMTLFRLLEESLCKKLDLTPGSVFIEHPQFNSDDNLWMQLAMFPPSGKYFNRSEIQRISFELSHQNFELRAEFGSFFFNAAPYNFSAADERTSTSISTGLLIGIAIGCAFLVLGLIGVGIYAIRQKKRAKDVIGLTKPFASWASSKQGSGDVPQLKGARYFSYGEIKSFTNNFSISNEIGSGGYGKVYRGITGDGQVVAIKRAKQESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFERGEHILVYEFMPNGTLRESLSGSSGVYLDWKRRLRVALGSARGLAYLHEHANPPIIHRDIKSTNILLDEYLNAKVADFGLSKLVFDDEKGHISTQVKGTLGYLDPGYYTTQQLTEKSDVYSFGVVMLELITSKLPIVKGKYIVREVLILINNNDQDNLRDIMDATIRDEMMNPIGFGRFLELAVKCVEESAADRPTMSEVVKEIESILQNDGISSSTTNFETLKGSPKYPKIISYKKNDIEDGNTFDYSGRYTLSAEVEPK 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28098178 28129251 + evm.model.ptg000004l.734 HCH11g0647 554114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0647 955 Gene3D Phosphorylase Kinase; domain 1 601 704 - -
HCH11g0647 955 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515(InterPro)
HCH11g0647 955 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515(InterPro)
HCH11g0647 955 Pfam Leucine Rich Repeat 287 310 IPR001611 GO:0005515(InterPro)
HCH11g0647 955 CDD STKc_IRAK 635 901 - -
HCH11g0647 955 ProSiteProfiles Protein kinase domain profile. 629 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0647 955 PANTHER RECEPTOR-LIKE PROTEIN 55 43 899 - -
HCH11g0647 955 Gene3D Ribonuclease Inhibitor 283 439 IPR032675 -
HCH11g0647 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0647 955 FunFam Leucine-rich repeat protein kinase family protein 595 704 - -
HCH11g0647 955 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524(InterPro)
HCH11g0647 955 SMART serkin_6 629 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0647 955 Gene3D Transferase(Phosphotransferase) domain 1 705 918 - -
HCH11g0647 955 FunFam Leucine-rich repeat protein kinase family protein 182 281 - -
HCH11g0647 955 SUPERFAMILY L domain-like 255 420 - -
HCH11g0647 955 ProSiteProfiles Leucine-rich repeat profile. 360 381 IPR001611 GO:0005515(InterPro)
HCH11g0647 955 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
HCH11g0647 955 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
HCH11g0647 955 SUPERFAMILY L domain-like 20 299 - -
HCH11g0647 955 FunFam Leucine-rich repeat family protein 26 181 - -
HCH11g0647 955 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
HCH11g0647 955 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 705 914 - -
HCH11g0647 955 Pfam Protein tyrosine and serine/threonine kinase 631 897 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0647 955 SUPERFAMILY Protein kinase-like (PK-like) 615 911 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0647 HCH-Chr11:28098178 HCH9g0850 HCH-Chr9:6038184 4.00E-97 dispersed
HCH11g0001 HCH-Chr11:592834 HCH11g0647 HCH-Chr11:28098178 0.00E+00 transposed
HCH11g0602 HCH-Chr11:13209983 HCH11g0647 HCH-Chr11:28098178 0.00E+00 transposed
HCH11g0647 HCH-Chr11:28098178 HCH2g0283 HCH-Chr2:41016684 1.40E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81059 PF07714 PK_Tyr_Ser-Thr 5.00E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0647 - - - 0.0