Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0647 | ATGTCTGCTGTGCTTTTTTTGGCTCTCTCATTCTTGTACGTTGGAATTCACAACACCTGCTCATACACAGACCACAACGATTTTGCAATCCTCCTATCTTTAAAAGAGGAATGGAAAAATACACCACCAACATGGGGAACATCAGCTGATGCATGTGGGAACTGGGAAGGAGTGGCATGCAACCATTCTAGAGTAACTGAATTAAAATTACCATCTATGGGTCTTCAAGGTACTCTTACTGGTGACATTGGTGGCCTCACTGAACTCACAACATTGGACCTGTCATTTAATAAAGATCTCACTGGTTCTCTCACTCCAAGTTTGGGGGATTTGCGTAATTTGAAAATCTTAATCCTTGCTGCCTGTGGTTTGAGTGGTAATATTCCAGAAGAATTGGGCAATCTTACTAACTTGATCTACTTGGCTTTGAACTTAAACAAGTTCACTGGTCATATACCTCCTACTCTGGGCAAACTCTCCAAACTAGTTGTGCTAGACTTTGCTGACAATCAGTTGACTGGACCTCTCCCCGTTTCAACTTTTGAATCGCCTGGTTTGGACCGCCTTCTCGTGGCTAAACACTTTCACTTCAGCAGGAACAAGCTATCAGGTTCCATACCACCAAATCTTTTTAGCTCTGATATGGCATTGATACACATAGTATTTGATGGGAATCAGTTTTCTGGGATTATTCCACCAACCTTAGGACTTGTTAAGAAGCTTGAAGTTCTTCGACTTGATCGTAATTTTCTGACCGGAACCGTCCCATCAAATCTCAACAATCTAACAAATATCAATCAATTGAATTTAGCTCACAATAATCTGACAGGTCCATTGCCAAACCTAACTCAAATGAGTTCACTAAGTTTTGTGGACCTTAGTAACAACTCATTTGAATCATCAACAGCTCCAGATTGGTTCTCAAGCTTACCATCTCTCACCACATTGATCATTGAATATGGATCAATACAAGGATCTGTGCCACAGGGAGTCTTCAGCTTACCACAGATACAACAAATAAGGCTGAAGAACAACGCATTTAGTGAGATATTGAGCATGGGCGACAACATCAACCAAAATCTGGAGCTTATTGATTTGCAAAATAACCAAATTTCCTCATTTACTAGTTCTGGATATAGCAAAACCTTGATGCTTGAAGGAAATCCTGTATGTGATATTGATGGTCACTTAAATGCAAACTATTGCAAGCTTCAACATCTAGCAACAAAGTCCAATTACACCAGCCTCATCAATTGTGAAATTAGATCATGTCCCGTAGGTGGGAAGCAGAACCCTCAAAGCTGCGAATGTCAATATCCATTCGAAGGAACTTTGTACTTTAGAGGACCCTCGTTTAGAGATTTGTCCAATATGACCCTGTTTCGCTTACTGGAAGAGAGTCTTTGCAAGAAACTGGACCTTACTCCGGGTTCAGTTTTTATTGAACATCCTCAGTTTAATAGTGATGACAATCTTTGGATGCAGCTTGCGATGTTTCCACCATCTGGAAAGTATTTCAACAGGTCAGAAATTCAGAGGATTAGTTTTGAATTGAGTCATCAAAATTTCGAGCTTCGTGCAGAGTTTGGGTCGTTCTTTTTCAATGCAGCTCCATATAATTTCTCAGCTGCGGATGAGAGAACTTCCACTTCCATTAGCACTGGTTTGCTGATAGGGATAGCTATTGGATGTGCATTTCTGGTCCTAGGCCTCATTGGAGTTGGAATATATGCAATTAGGCAAAAGAAACGTGCAAAAGATGTCATTGGATTGACTAAGCCATTTGCTTCCTGGGCATCAAGTAAACAAGGTAGTGGAGATGTACCGCAGTTAAAGGGAGCAAGATATTTTTCTTATGGTGAAATTAAAAGTTTCACAAATAATTTCTCCATAAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTTTATAGAGGAATAACTGGGGATGGACAAGTAGTTGCAATTAAAAGAGCAAAGCAAGAATCAATGCAAGGTGGGCTTGAGTTCAAAACAGAAATTGAATTGCTTTCACGAGTTCATCATAAGAATCTTGTCAGCCTGATAGGATTTTGTTTTGAACGAGGTGAACATATCCTTGTTTATGAATTCATGCCTAATGGAACACTTAGAGAGAGCTTATCTGGGAGTTCCGGTGTCTATCTTGATTGGAAAAGAAGACTTCGAGTAGCACTTGGATCTGCTAGAGGATTGGCTTACCTACACGAGCATGCAAATCCTCCTATTATCCATAGAGATATCAAGTCCACAAATATTCTGTTGGATGAATATTTAAATGCAAAGGTCGCGGATTTCGGCTTGTCCAAGCTTGTATTTGACGATGAAAAGGGACATATTTCTACTCAAGTTAAAGGCACGTTGGGTTATTTGGATCCCGGATATTATACTACACAACAATTAACCGAGAAGAGTGATGTGTACAGCTTTGGTGTGGTTATGCTTGAATTGATAACTTCTAAACTTCCAATTGTGAAAGGGAAGTATATAGTCCGAGAAGTGCTTATACTGATAAATAACAATGACCAAGATAACTTGAGGGATATAATGGATGCAACTATCAGAGATGAAATGATGAATCCAATCGGGTTTGGAAGGTTCTTGGAATTGGCTGTAAAATGTGTAGAAGAATCAGCCGCAGATCGTCCAACAATGAGTGAAGTAGTCAAAGAAATTGAAAGCATTTTACAGAATGATGGAATATCCTCATCTACCACAAACTTCGAAACTTTGAAGGGTTCTCCCAAATATCCTAAAATAATATCATACAAAAAAAACGATATCGAGGATGGTAACACTTTTGACTATAGTGGTAGATACACACTTTCAGCCGAAGTGGAACCTAAGTAG | 2868 | 39.54 | MSAVLFLALSFLYVGIHNTCSYTDHNDFAILLSLKEEWKNTPPTWGTSADACGNWEGVACNHSRVTELKLPSMGLQGTLTGDIGGLTELTTLDLSFNKDLTGSLTPSLGDLRNLKILILAACGLSGNIPEELGNLTNLIYLALNLNKFTGHIPPTLGKLSKLVVLDFADNQLTGPLPVSTFESPGLDRLLVAKHFHFSRNKLSGSIPPNLFSSDMALIHIVFDGNQFSGIIPPTLGLVKKLEVLRLDRNFLTGTVPSNLNNLTNINQLNLAHNNLTGPLPNLTQMSSLSFVDLSNNSFESSTAPDWFSSLPSLTTLIIEYGSIQGSVPQGVFSLPQIQQIRLKNNAFSEILSMGDNINQNLELIDLQNNQISSFTSSGYSKTLMLEGNPVCDIDGHLNANYCKLQHLATKSNYTSLINCEIRSCPVGGKQNPQSCECQYPFEGTLYFRGPSFRDLSNMTLFRLLEESLCKKLDLTPGSVFIEHPQFNSDDNLWMQLAMFPPSGKYFNRSEIQRISFELSHQNFELRAEFGSFFFNAAPYNFSAADERTSTSISTGLLIGIAIGCAFLVLGLIGVGIYAIRQKKRAKDVIGLTKPFASWASSKQGSGDVPQLKGARYFSYGEIKSFTNNFSISNEIGSGGYGKVYRGITGDGQVVAIKRAKQESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFERGEHILVYEFMPNGTLRESLSGSSGVYLDWKRRLRVALGSARGLAYLHEHANPPIIHRDIKSTNILLDEYLNAKVADFGLSKLVFDDEKGHISTQVKGTLGYLDPGYYTTQQLTEKSDVYSFGVVMLELITSKLPIVKGKYIVREVLILINNNDQDNLRDIMDATIRDEMMNPIGFGRFLELAVKCVEESAADRPTMSEVVKEIESILQNDGISSSTTNFETLKGSPKYPKIISYKKNDIEDGNTFDYSGRYTLSAEVEPK | 955 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28098178 | 28129251 | + | evm.model.ptg000004l.734 | HCH11g0647 | 554114 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0647 | 955 | Gene3D | Phosphorylase Kinase; domain 1 | 601 | 704 | - | - | |
HCH11g0647 | 955 | Pfam | Leucine Rich Repeat | 240 | 262 | IPR001611 | GO:0005515(InterPro) | |
HCH11g0647 | 955 | Pfam | Leucine Rich Repeat | 113 | 135 | IPR001611 | GO:0005515(InterPro) | |
HCH11g0647 | 955 | Pfam | Leucine Rich Repeat | 287 | 310 | IPR001611 | GO:0005515(InterPro) | |
HCH11g0647 | 955 | CDD | STKc_IRAK | 635 | 901 | - | - | |
HCH11g0647 | 955 | ProSiteProfiles | Protein kinase domain profile. | 629 | 902 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g0647 | 955 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 43 | 899 | - | - | |
HCH11g0647 | 955 | Gene3D | Ribonuclease Inhibitor | 283 | 439 | IPR032675 | - | |
HCH11g0647 | 955 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 749 | 761 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g0647 | 955 | FunFam | Leucine-rich repeat protein kinase family protein | 595 | 704 | - | - | |
HCH11g0647 | 955 | ProSitePatterns | Protein kinases ATP-binding region signature. | 635 | 657 | IPR017441 | GO:0005524(InterPro) | |
HCH11g0647 | 955 | SMART | serkin_6 | 629 | 902 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g0647 | 955 | Gene3D | Transferase(Phosphotransferase) domain 1 | 705 | 918 | - | - | |
HCH11g0647 | 955 | FunFam | Leucine-rich repeat protein kinase family protein | 182 | 281 | - | - | |
HCH11g0647 | 955 | SUPERFAMILY | L domain-like | 255 | 420 | - | - | |
HCH11g0647 | 955 | ProSiteProfiles | Leucine-rich repeat profile. | 360 | 381 | IPR001611 | GO:0005515(InterPro) | |
HCH11g0647 | 955 | Gene3D | Ribonuclease Inhibitor | 27 | 181 | IPR032675 | - | |
HCH11g0647 | 955 | Pfam | Leucine rich repeat N-terminal domain | 25 | 61 | IPR013210 | - | |
HCH11g0647 | 955 | SUPERFAMILY | L domain-like | 20 | 299 | - | - | |
HCH11g0647 | 955 | FunFam | Leucine-rich repeat family protein | 26 | 181 | - | - | |
HCH11g0647 | 955 | Gene3D | Ribonuclease Inhibitor | 182 | 282 | IPR032675 | - | |
HCH11g0647 | 955 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 705 | 914 | - | - | |
HCH11g0647 | 955 | Pfam | Protein tyrosine and serine/threonine kinase | 631 | 897 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g0647 | 955 | SUPERFAMILY | Protein kinase-like (PK-like) | 615 | 911 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0647 | HCH-Chr11:28098178 | HCH9g0850 | HCH-Chr9:6038184 | 4.00E-97 | dispersed | |
HCH11g0001 | HCH-Chr11:592834 | HCH11g0647 | HCH-Chr11:28098178 | 0.00E+00 | transposed | |
HCH11g0602 | HCH-Chr11:13209983 | HCH11g0647 | HCH-Chr11:28098178 | 0.00E+00 | transposed | |
HCH11g0647 | HCH-Chr11:28098178 | HCH2g0283 | HCH-Chr2:41016684 | 1.40E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81059 | PF07714 | PK_Tyr_Ser-Thr | 5.00E-46 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0647 | - | - | - | 0.0 |