Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0656 | ATGAATAACTTGACTGTTGAAATAGAAGATGCTTTTTCCAGTTTGCTTGAACTTGCTGCAAATGATGACATAGATGGGTTCAAGAGATCAATTGAGCGCGACCCATCTGGTATTGATGAGATTGGTTTATGGTATGGTCGCTTGAGAGGCTCGAAGCAGATGATTAATGAGCAAAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCTATGAGGTTATGAAGCTGATTCTTTCTCTTTCTTGTGCTGATGTAAACCGTGCTGTTGGTCTTGACAGAAGCACTGCTCTTCACTGTGCGGCTTCAGGTGGGGCTGTGAATGCTATAGATATCGTGAAGCTGCTCTTAGCAGCTGGTGCTGATCCAAATATGGTTGATGGCAATGGACACCGACCTGTTGATCTGATTATTGTTCCACCAAGGGTTGGAGAGATTAAATCAGCCCTTACGGAACTCCTTGCAACAAATGGATTGTCTGGTGAAGGCAATTTAACTGTTTTAACAGGCACTGTGAATTCACATTCTCCTCGCCCTTCATCGCCTCTAAATGTATCCTCATTGACCGAATTAATTTCTTCACCAACCAAATCGAAATTTAGTGATCTTCCTATGTATTCTGCATCTGAAAAGAAAGAATACCCTGTCGACCTTTCTCTTCCAGACATCAAGAATAGCATCTACTCCACTGATGAATTCCGTATGTATTCCTTCAAGGTTAGACCCTGTTCACGTGCTTACTCTCATGATTGGACAGAGTGCCCCTTTGTTCATCCTGGAGAAAATGCAAGGAGGAGGGACCCAAGAAAGTTCCACTACAGCTGTGTTCCTTGTCCTGATTTCCGAAAAGGGGCTTGCCGACGTGGAGATATGTGTGAGTATGCTCATGGGGTTTTCGAGTGCTGGCTACACCCAGCTCAGTATCGGACCCGTCTTTGCAAAGATGGTACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACACACCACAGATGAACTGCGGCCACTATATGTCTCAACTGGTTCTGCCGTTCCTTCCCCGCGTTCTTGTAATTCTGGGGGGGCTGCTATGGATTATAATACGGTCATGAACCTTCTACCTGGTTCGCCATCTTCAGTGCCTGTAATGTCTCCTTCACCATTTACTCCTCCCATGTCTCCCTCTGCCAATGGAATGTCTCACTCTTCTTTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGTCGCCTAAGATCATCTCTGAGTGCCAGAGACATTCCTGTGGAGGACTTTGATTTTCTGAGTGATTTTGATCTGCAACAGCAGCAGCTTCTTAATGACTTGAATTGCCTTTCTCAACCACCATTAAGTTCCAATTCGTTGAACCGTTCTGGTCGGATGAAAACGTTGACCCCTTCAAATCTGGATGATCTCTTTTCTGCTGAGAGTTCATCTCCTAGGTACTCTGATCAGGCTTTGGCTTCGGCTGTTTTTTCCCCCACACATAAGTCAGCTCTTCTCAATCAATTTCAGCAGCAACAATCTATGCTATCACCTATCAACACAAATTTCTCTCCTAAAAATGTGGACCACCCTCTATTGCAAGCCTCTTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATGTGGAACCCATCTCTCCAATGGGATCTCGCTTGTCCATGTTAGCTCAGAGAGAGAAACAGCAGCAGTTTCGTAGTCTCAGTTCACGGGAACTTGGTGCCAACTCCACCTCTATTGTTGGTTCCCCTGCAAGCTCTTGGTCTAAATGGGGGTCTTCTAATGGAAAACCTGATTGGGCTGTTAACCCAGATGAAATGGGTAAACTTCGACGTTCTTCGTCATTTGAGCTTGGGAACAATGGAGAAGAGCCGGATTTATCATGGGTTCAATCACTTGTCAAAGAATCTCCTACTGAGATTAAAGAAAAGCTAACCCAGCCAAGTTCTGGTGGCGAGAGGTTGGTTTCTTCTGGTGAAAGTTCTAATTTGAACTCTCAAATGGATTCGGTTGATCATGCTGCATTAGGAGCATGGCTTGAACAAATGCAGCTCGATCATCTGGTCGCTCAGCAAAACTGA | 2109 | 45.14 | MNNLTVEIEDAFSSLLELAANDDIDGFKRSIERDPSGIDEIGLWYGRLRGSKQMINEQRTPLMVAATYGSYEVMKLILSLSCADVNRAVGLDRSTALHCAASGGAVNAIDIVKLLLAAGADPNMVDGNGHRPVDLIIVPPRVGEIKSALTELLATNGLSGEGNLTVLTGTVNSHSPRPSSPLNVSSLTELISSPTKSKFSDLPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTDELRPLYVSTGSAVPSPRSCNSGGAAMDYNTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSLAWPQPNVPALHLPGSNIQSSRLRSSLSARDIPVEDFDFLSDFDLQQQQLLNDLNCLSQPPLSSNSLNRSGRMKTLTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSALLNQFQQQQSMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNVEPISPMGSRLSMLAQREKQQQFRSLSSRELGANSTSIVGSPASSWSKWGSSNGKPDWAVNPDEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLTQPSSGGERLVSSGESSNLNSQMDSVDHAALGAWLEQMQLDHLVAQQN | 702 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29146192 | 29148300 | - | evm.model.ptg000004l.725 | HCH11g0656 | 554123 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0656 | 702 | Pfam | Ankyrin repeats (3 copies) | 57 | 126 | IPR002110 | GO:0005515(InterPro) | |
HCH11g0656 | 702 | Gene3D | - | 271 | 334 | - | - | |
HCH11g0656 | 702 | MobiDBLite | consensus disorder prediction | 574 | 605 | - | - | |
HCH11g0656 | 702 | ProSiteProfiles | Ankyrin repeat region circular profile. | 92 | 126 | - | - | |
HCH11g0656 | 702 | PANTHER | UNKEMPT FAMILY MEMBER | 53 | 647 | IPR045234 | - | |
HCH11g0656 | 702 | MobiDBLite | consensus disorder prediction | 574 | 615 | - | - | |
HCH11g0656 | 702 | FunFam | Zinc finger CCCH domain-containing protein 66 | 229 | 297 | - | - | |
HCH11g0656 | 702 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 298 | IPR000571 | GO:0046872(InterPro) | |
HCH11g0656 | 702 | ProSiteProfiles | Ankyrin repeat profile. | 92 | 127 | IPR002110 | GO:0005515(InterPro) | |
HCH11g0656 | 702 | MobiDBLite | consensus disorder prediction | 648 | 676 | - | - | |
HCH11g0656 | 702 | SUPERFAMILY | Ankyrin repeat | 56 | 136 | IPR036770 | - | |
HCH11g0656 | 702 | MobiDBLite | consensus disorder prediction | 652 | 676 | - | - | |
HCH11g0656 | 702 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 275 | 296 | IPR000571 | GO:0046872(InterPro) | |
HCH11g0656 | 702 | Gene3D | - | 8 | 153 | IPR036770 | - | |
HCH11g0656 | 702 | PRINTS | Ankyrin repeat signature | 111 | 125 | IPR002110 | GO:0005515(InterPro) | |
HCH11g0656 | 702 | PRINTS | Ankyrin repeat signature | 58 | 73 | IPR002110 | GO:0005515(InterPro) | |
HCH11g0656 | 702 | SMART | c3hfinal6 | 271 | 297 | IPR000571 | GO:0046872(InterPro) | |
HCH11g0656 | 702 | SMART | c3hfinal6 | 306 | 329 | IPR000571 | GO:0046872(InterPro) | |
HCH11g0656 | 702 | SMART | ANK_2a | 57 | 87 | IPR002110 | GO:0005515(InterPro) | |
HCH11g0656 | 702 | SMART | ANK_2a | 92 | 124 | IPR002110 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0656 | HCH-Chr11:29146192 | HCH6g0358 | HCH-Chr6:5775836 | 2.10E-257 | dispersed | |
HCH11g0656 | HCH-Chr11:29146192 | HCH1g0362 | HCH-Chr1:50648123 | 7.40E-141 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32578 | PF12796 | Ank_2 | 3.20E-10 | CL0465 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0656 | - | - | - | 0.0 |