Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0656 ATGAATAACTTGACTGTTGAAATAGAAGATGCTTTTTCCAGTTTGCTTGAACTTGCTGCAAATGATGACATAGATGGGTTCAAGAGATCAATTGAGCGCGACCCATCTGGTATTGATGAGATTGGTTTATGGTATGGTCGCTTGAGAGGCTCGAAGCAGATGATTAATGAGCAAAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCTATGAGGTTATGAAGCTGATTCTTTCTCTTTCTTGTGCTGATGTAAACCGTGCTGTTGGTCTTGACAGAAGCACTGCTCTTCACTGTGCGGCTTCAGGTGGGGCTGTGAATGCTATAGATATCGTGAAGCTGCTCTTAGCAGCTGGTGCTGATCCAAATATGGTTGATGGCAATGGACACCGACCTGTTGATCTGATTATTGTTCCACCAAGGGTTGGAGAGATTAAATCAGCCCTTACGGAACTCCTTGCAACAAATGGATTGTCTGGTGAAGGCAATTTAACTGTTTTAACAGGCACTGTGAATTCACATTCTCCTCGCCCTTCATCGCCTCTAAATGTATCCTCATTGACCGAATTAATTTCTTCACCAACCAAATCGAAATTTAGTGATCTTCCTATGTATTCTGCATCTGAAAAGAAAGAATACCCTGTCGACCTTTCTCTTCCAGACATCAAGAATAGCATCTACTCCACTGATGAATTCCGTATGTATTCCTTCAAGGTTAGACCCTGTTCACGTGCTTACTCTCATGATTGGACAGAGTGCCCCTTTGTTCATCCTGGAGAAAATGCAAGGAGGAGGGACCCAAGAAAGTTCCACTACAGCTGTGTTCCTTGTCCTGATTTCCGAAAAGGGGCTTGCCGACGTGGAGATATGTGTGAGTATGCTCATGGGGTTTTCGAGTGCTGGCTACACCCAGCTCAGTATCGGACCCGTCTTTGCAAAGATGGTACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACACACCACAGATGAACTGCGGCCACTATATGTCTCAACTGGTTCTGCCGTTCCTTCCCCGCGTTCTTGTAATTCTGGGGGGGCTGCTATGGATTATAATACGGTCATGAACCTTCTACCTGGTTCGCCATCTTCAGTGCCTGTAATGTCTCCTTCACCATTTACTCCTCCCATGTCTCCCTCTGCCAATGGAATGTCTCACTCTTCTTTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGTCGCCTAAGATCATCTCTGAGTGCCAGAGACATTCCTGTGGAGGACTTTGATTTTCTGAGTGATTTTGATCTGCAACAGCAGCAGCTTCTTAATGACTTGAATTGCCTTTCTCAACCACCATTAAGTTCCAATTCGTTGAACCGTTCTGGTCGGATGAAAACGTTGACCCCTTCAAATCTGGATGATCTCTTTTCTGCTGAGAGTTCATCTCCTAGGTACTCTGATCAGGCTTTGGCTTCGGCTGTTTTTTCCCCCACACATAAGTCAGCTCTTCTCAATCAATTTCAGCAGCAACAATCTATGCTATCACCTATCAACACAAATTTCTCTCCTAAAAATGTGGACCACCCTCTATTGCAAGCCTCTTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATGTGGAACCCATCTCTCCAATGGGATCTCGCTTGTCCATGTTAGCTCAGAGAGAGAAACAGCAGCAGTTTCGTAGTCTCAGTTCACGGGAACTTGGTGCCAACTCCACCTCTATTGTTGGTTCCCCTGCAAGCTCTTGGTCTAAATGGGGGTCTTCTAATGGAAAACCTGATTGGGCTGTTAACCCAGATGAAATGGGTAAACTTCGACGTTCTTCGTCATTTGAGCTTGGGAACAATGGAGAAGAGCCGGATTTATCATGGGTTCAATCACTTGTCAAAGAATCTCCTACTGAGATTAAAGAAAAGCTAACCCAGCCAAGTTCTGGTGGCGAGAGGTTGGTTTCTTCTGGTGAAAGTTCTAATTTGAACTCTCAAATGGATTCGGTTGATCATGCTGCATTAGGAGCATGGCTTGAACAAATGCAGCTCGATCATCTGGTCGCTCAGCAAAACTGA 2109 45.14 MNNLTVEIEDAFSSLLELAANDDIDGFKRSIERDPSGIDEIGLWYGRLRGSKQMINEQRTPLMVAATYGSYEVMKLILSLSCADVNRAVGLDRSTALHCAASGGAVNAIDIVKLLLAAGADPNMVDGNGHRPVDLIIVPPRVGEIKSALTELLATNGLSGEGNLTVLTGTVNSHSPRPSSPLNVSSLTELISSPTKSKFSDLPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTDELRPLYVSTGSAVPSPRSCNSGGAAMDYNTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSLAWPQPNVPALHLPGSNIQSSRLRSSLSARDIPVEDFDFLSDFDLQQQQLLNDLNCLSQPPLSSNSLNRSGRMKTLTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSALLNQFQQQQSMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNVEPISPMGSRLSMLAQREKQQQFRSLSSRELGANSTSIVGSPASSWSKWGSSNGKPDWAVNPDEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLTQPSSGGERLVSSGESSNLNSQMDSVDHAALGAWLEQMQLDHLVAQQN 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29146192 29148300 - evm.model.ptg000004l.725 HCH11g0656 554123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0656 702 Pfam Ankyrin repeats (3 copies) 57 126 IPR002110 GO:0005515(InterPro)
HCH11g0656 702 Gene3D - 271 334 - -
HCH11g0656 702 MobiDBLite consensus disorder prediction 574 605 - -
HCH11g0656 702 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
HCH11g0656 702 PANTHER UNKEMPT FAMILY MEMBER 53 647 IPR045234 -
HCH11g0656 702 MobiDBLite consensus disorder prediction 574 615 - -
HCH11g0656 702 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
HCH11g0656 702 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872(InterPro)
HCH11g0656 702 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
HCH11g0656 702 MobiDBLite consensus disorder prediction 648 676 - -
HCH11g0656 702 SUPERFAMILY Ankyrin repeat 56 136 IPR036770 -
HCH11g0656 702 MobiDBLite consensus disorder prediction 652 676 - -
HCH11g0656 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 296 IPR000571 GO:0046872(InterPro)
HCH11g0656 702 Gene3D - 8 153 IPR036770 -
HCH11g0656 702 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515(InterPro)
HCH11g0656 702 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515(InterPro)
HCH11g0656 702 SMART c3hfinal6 271 297 IPR000571 GO:0046872(InterPro)
HCH11g0656 702 SMART c3hfinal6 306 329 IPR000571 GO:0046872(InterPro)
HCH11g0656 702 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
HCH11g0656 702 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0656 HCH-Chr11:29146192 HCH6g0358 HCH-Chr6:5775836 2.10E-257 dispersed
HCH11g0656 HCH-Chr11:29146192 HCH1g0362 HCH-Chr1:50648123 7.40E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32578 PF12796 Ank_2 3.20E-10 CL0465 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0656 - - - 0.0