Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0661 | ATGGAAAATCATGGTGAGGGTTCAAATAGTCCAAATCATAGCTTCGAGAGAAATGAACCTGTGAAATCAAGATGGACTCCGAAGCCTGAACAAATTTTGATACTTGAGTCCATCTTCAACAGTGGAATGGTAAATCCTCCCAAAGATGAAACTGTTAGAATAAGAAAGTTGCTCGAGAAATTTGGTTCTGTTGGAGACGCAAACGTTTTTTACTGGTTTCAAAATCGGAGGTCTAGGTCTCGCCGCCGACAACGCCAGATGCAGTCGGCGGTAATTCTTGAACAATCAAATCAGACACAAAGCGGTGGCGGTGGAGGTAGTGTAATTCACTTCGATGGTTGCGCCGCCGCCGCCGCTTCTGCTGCTATGAATTTTGGAGCTTCTCCATCTTTTCCTTTTTCTTCTACCTCTTATCTTACAGGCGGTGGCTCGTCTTCATCTTGCGGTGATGTCGGCGGTGCCGATATCACTCTCTTTCCGGTGTCCGGTCAAATGGGTTTTCCTGAAATTATGCCTAACACCGGTATAATACCGGTGACTGCTTCCTTTCCTCCTTCAGATCATAACTCAAACATACATTTCCAATCTGGTTACATATTGATATTTATAAATGGAGTTCCAACAGAAGTTCCAAAGGGGCCACTGGAGATGAAGGCGATGTTTGGTAATGATGCAATGTTGGTTCATTCATCAGGAGTGCCAGTTCCAACCAATGAATTTGGATTCTCAGTGCAGAGCTTGCAGCATGGTGAAAACTATTATCTGGTTTCAAGACCCAACATGAGTTAG | 789 | 44.23 | MENHGEGSNSPNHSFERNEPVKSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQMQSAVILEQSNQTQSGGGGGSVIHFDGCAAAAASAAMNFGASPSFPFSSTSYLTGGGSSSSCGDVGGADITLFPVSGQMGFPEIMPNTGIIPVTASFPPSDHNSNIHFQSGYILIFINGVPTEVPKGPLEMKAMFGNDAMLVHSSGVPVPTNEFGFSVQSLQHGENYYLVSRPNMS | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29739035 | 29742242 | - | evm.model.ptg000004l.720 | HCH11g0661 | 554128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0661 | 262 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
HCH11g0661 | 262 | ProSiteProfiles | 'Homeobox' domain profile. | 18 | 83 | IPR001356 | GO:0003677(InterPro) | |
HCH11g0661 | 262 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 7 | 259 | IPR044558 | GO:0003700(InterPro)|GO:0048830(InterPro) | |
HCH11g0661 | 262 | Gene3D | - | 22 | 90 | - | - | |
HCH11g0661 | 262 | FunFam | WUSCHEL-related homeobox 11 | 22 | 89 | - | - | |
HCH11g0661 | 262 | Pfam | Homeodomain | 22 | 82 | IPR001356 | GO:0003677(InterPro) | |
HCH11g0661 | 262 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
HCH11g0661 | 262 | SMART | HOX_1 | 20 | 87 | IPR001356 | GO:0003677(InterPro) | |
HCH11g0661 | 262 | SUPERFAMILY | Homeodomain-like | 17 | 89 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0661 | HCH-Chr11:29739035 | HCH14g0958 | HCH-Chr14:37064471 | 4.20E-25 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32579 | PF00046 | Homeodomain | 8.20E-13 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0661 | - | - | - | 0.0 |