Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0661 ATGGAAAATCATGGTGAGGGTTCAAATAGTCCAAATCATAGCTTCGAGAGAAATGAACCTGTGAAATCAAGATGGACTCCGAAGCCTGAACAAATTTTGATACTTGAGTCCATCTTCAACAGTGGAATGGTAAATCCTCCCAAAGATGAAACTGTTAGAATAAGAAAGTTGCTCGAGAAATTTGGTTCTGTTGGAGACGCAAACGTTTTTTACTGGTTTCAAAATCGGAGGTCTAGGTCTCGCCGCCGACAACGCCAGATGCAGTCGGCGGTAATTCTTGAACAATCAAATCAGACACAAAGCGGTGGCGGTGGAGGTAGTGTAATTCACTTCGATGGTTGCGCCGCCGCCGCCGCTTCTGCTGCTATGAATTTTGGAGCTTCTCCATCTTTTCCTTTTTCTTCTACCTCTTATCTTACAGGCGGTGGCTCGTCTTCATCTTGCGGTGATGTCGGCGGTGCCGATATCACTCTCTTTCCGGTGTCCGGTCAAATGGGTTTTCCTGAAATTATGCCTAACACCGGTATAATACCGGTGACTGCTTCCTTTCCTCCTTCAGATCATAACTCAAACATACATTTCCAATCTGGTTACATATTGATATTTATAAATGGAGTTCCAACAGAAGTTCCAAAGGGGCCACTGGAGATGAAGGCGATGTTTGGTAATGATGCAATGTTGGTTCATTCATCAGGAGTGCCAGTTCCAACCAATGAATTTGGATTCTCAGTGCAGAGCTTGCAGCATGGTGAAAACTATTATCTGGTTTCAAGACCCAACATGAGTTAG 789 44.23 MENHGEGSNSPNHSFERNEPVKSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQMQSAVILEQSNQTQSGGGGGSVIHFDGCAAAAASAAMNFGASPSFPFSSTSYLTGGGSSSSCGDVGGADITLFPVSGQMGFPEIMPNTGIIPVTASFPPSDHNSNIHFQSGYILIFINGVPTEVPKGPLEMKAMFGNDAMLVHSSGVPVPTNEFGFSVQSLQHGENYYLVSRPNMS 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29739035 29742242 - evm.model.ptg000004l.720 HCH11g0661 554128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0661 262 MobiDBLite consensus disorder prediction 1 16 - -
HCH11g0661 262 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677(InterPro)
HCH11g0661 262 PANTHER WUSCHEL-RELATED HOMEOBOX 11 7 259 IPR044558 GO:0003700(InterPro)|GO:0048830(InterPro)
HCH11g0661 262 Gene3D - 22 90 - -
HCH11g0661 262 FunFam WUSCHEL-related homeobox 11 22 89 - -
HCH11g0661 262 Pfam Homeodomain 22 82 IPR001356 GO:0003677(InterPro)
HCH11g0661 262 MobiDBLite consensus disorder prediction 1 24 - -
HCH11g0661 262 SMART HOX_1 20 87 IPR001356 GO:0003677(InterPro)
HCH11g0661 262 SUPERFAMILY Homeodomain-like 17 89 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0661 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0661 HCH-Chr11:29739035 HCH14g0958 HCH-Chr14:37064471 4.20E-25 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0661 . 19 256 Wox Gene Family AT3G03660 55.5 8.7e-51 197.6
HCH12g0054 . 28 173 Wox Gene Family AT1G20700 50.7 1.7e-37 152.9
HCH4g0626 . 5 153 Wox Gene Family AT1G46480 68.4 2.5e-51 198.7
HCH13g0539 . 31 191 Wox Gene Family AT3G11260 51.7 6.2e-39 157.5
HCH4g0626 . 5 153 Wox Gene Family AT1G46480 68.4 2.5e-51 198.7
HCH13g0539 . 31 191 Wox Gene Family AT3G11260 51.7 6.2e-39 157.5
HCH11g0661 . 19 256 Wox Gene Family AT3G03660 55.5 8.7e-51 197.6
HCH12g0054 . 28 173 Wox Gene Family AT1G20700 50.7 1.7e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32579 PF00046 Homeodomain 8.20E-13 CL0123 HCH TF