Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0661 ATGGAAAATCATGGTGAGGGTTCAAATAGTCCAAATCATAGCTTCGAGAGAAATGAACCTGTGAAATCAAGATGGACTCCGAAGCCTGAACAAATTTTGATACTTGAGTCCATCTTCAACAGTGGAATGGTAAATCCTCCCAAAGATGAAACTGTTAGAATAAGAAAGTTGCTCGAGAAATTTGGTTCTGTTGGAGACGCAAACGTTTTTTACTGGTTTCAAAATCGGAGGTCTAGGTCTCGCCGCCGACAACGCCAGATGCAGTCGGCGGTAATTCTTGAACAATCAAATCAGACACAAAGCGGTGGCGGTGGAGGTAGTGTAATTCACTTCGATGGTTGCGCCGCCGCCGCCGCTTCTGCTGCTATGAATTTTGGAGCTTCTCCATCTTTTCCTTTTTCTTCTACCTCTTATCTTACAGGCGGTGGCTCGTCTTCATCTTGCGGTGATGTCGGCGGTGCCGATATCACTCTCTTTCCGGTGTCCGGTCAAATGGGTTTTCCTGAAATTATGCCTAACACCGGTATAATACCGGTGACTGCTTCCTTTCCTCCTTCAGATCATAACTCAAACATACATTTCCAATCTGGTTACATATTGATATTTATAAATGGAGTTCCAACAGAAGTTCCAAAGGGGCCACTGGAGATGAAGGCGATGTTTGGTAATGATGCAATGTTGGTTCATTCATCAGGAGTGCCAGTTCCAACCAATGAATTTGGATTCTCAGTGCAGAGCTTGCAGCATGGTGAAAACTATTATCTGGTTTCAAGACCCAACATGAGTTAG 789 44.23 MENHGEGSNSPNHSFERNEPVKSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQMQSAVILEQSNQTQSGGGGGSVIHFDGCAAAAASAAMNFGASPSFPFSSTSYLTGGGSSSSCGDVGGADITLFPVSGQMGFPEIMPNTGIIPVTASFPPSDHNSNIHFQSGYILIFINGVPTEVPKGPLEMKAMFGNDAMLVHSSGVPVPTNEFGFSVQSLQHGENYYLVSRPNMS 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29739035 29742242 - evm.model.ptg000004l.720 HCH11g0661 554128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0661 262 MobiDBLite consensus disorder prediction 1 16 - -
HCH11g0661 262 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677(InterPro)
HCH11g0661 262 PANTHER WUSCHEL-RELATED HOMEOBOX 11 7 259 IPR044558 GO:0003700(InterPro)|GO:0048830(InterPro)
HCH11g0661 262 Gene3D - 22 90 - -
HCH11g0661 262 FunFam WUSCHEL-related homeobox 11 22 89 - -
HCH11g0661 262 Pfam Homeodomain 22 82 IPR001356 GO:0003677(InterPro)
HCH11g0661 262 MobiDBLite consensus disorder prediction 1 24 - -
HCH11g0661 262 SMART HOX_1 20 87 IPR001356 GO:0003677(InterPro)
HCH11g0661 262 SUPERFAMILY Homeodomain-like 17 89 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0661 HCH-Chr11:29739035 HCH14g0958 HCH-Chr14:37064471 4.20E-25 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32579 PF00046 Homeodomain 8.20E-13 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0661 - - - 0.0