Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0670 ATGGAATTCTTACAAACACTCGATACTCAGTTTCTCCTCAGTTTATCAATCGCTTTCGTAGCCATTGTTTTTGCTGCTATTTTCCTCTTTTTCTCTAACAAACGCACACCCAAAGACTGCTTGGATCCAGAGAAGTTCAATAAGTTTAAGCTCATTAAGCGTACAAAGCTGAGCCATAATGTCGCGAAATTCACGTTTATACTTCCTACACCCACCTCTGTTCTTGGTCTTCCCATTGGACAGCACATAAGTTGCAGGGGGAAGGATAGCCAAGGTGAAGATGTTGTTAAACCTTATACCCCCACTACATTGGACTCTGATATTGGATATTTTGAATTGGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGTGAAATGCGTATTGGGGATTTTCTTGCTGTGAAGGGACCGAAGGGGCGTTTCAAGTATCAACCTGGTCAAGTTCGAGAATTTGGAATGCTTGCTGGAGGCTCTGGCATTACTCCCATGTTTCAAGTCGCTAGAGCTATATTAGAAAACCCTAGTGACAGGACAAGAGTTCATCTTATTTATGCGAATGTTACATATGAAGATATTCTTTTGAAGGAGGAGCTAGATCTTCTTGCCACTAGATACCCTGATCAATTCAAGATCTACTACGTATTGAATCAGCCTCCTGAAGTTTGGGAAGGTGGTGTTGGCTTTGTGTCCAAGGAAATTATTCAAACACATTTCCCTGCACCTGCTCCTGGTATTCAGATTCTAAGGTGCGGTCCGCCGCCCATGAACAAAGCCATGGCCTCCCACCTTGAAGGTCTTGAATATACACCTGAAATGCAGTTTCAGTTCTGA 843 42.7 MEFLQTLDTQFLLSLSIAFVAIVFAAIFLFFSNKRTPKDCLDPEKFNKFKLIKRTKLSHNVAKFTFILPTPTSVLGLPIGQHISCRGKDSQGEDVVKPYTPTTLDSDIGYFELVIKMYPQGRMSHHFREMRIGDFLAVKGPKGRFKYQPGQVREFGMLAGGSGITPMFQVARAILENPSDRTRVHLIYANVTYEDILLKEELDLLATRYPDQFKIYYVLNQPPEVWEGGVGFVSKEIIQTHFPAPAPGIQILRCGPPPMNKAMASHLEGLEYTPEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31079199 31102696 + evm.model.ptg000004l.711 HCH11g0670 554137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0670 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 24 280 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
HCH11g0670 280 SUPERFAMILY Riboflavin synthase domain-like 40 149 IPR017938 -
HCH11g0670 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491(InterPro)
HCH11g0670 280 CDD cyt_b5_reduct_like 49 280 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
HCH11g0670 280 Gene3D Translation factors 39 138 - -
HCH11g0670 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
HCH11g0670 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491(InterPro)
HCH11g0670 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491(InterPro)
HCH11g0670 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491(InterPro)
HCH11g0670 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
HCH11g0670 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
HCH11g0670 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
HCH11g0670 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 275 IPR039261 -
HCH11g0670 280 Gene3D - 139 280 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0670 HCH-Chr11:31079199 HCH9g0948 HCH-Chr9:7043145 1.60E-134 dispersed
HCH11g0670 HCH-Chr11:31079199 HCH12g0785 HCH-Chr12:5069167 2.80E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0670 K00326 - rcu:8268574 456.832