Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0670 ATGGAATTCTTACAAACACTCGATACTCAGTTTCTCCTCAGTTTATCAATCGCTTTCGTAGCCATTGTTTTTGCTGCTATTTTCCTCTTTTTCTCTAACAAACGCACACCCAAAGACTGCTTGGATCCAGAGAAGTTCAATAAGTTTAAGCTCATTAAGCGTACAAAGCTGAGCCATAATGTCGCGAAATTCACGTTTATACTTCCTACACCCACCTCTGTTCTTGGTCTTCCCATTGGACAGCACATAAGTTGCAGGGGGAAGGATAGCCAAGGTGAAGATGTTGTTAAACCTTATACCCCCACTACATTGGACTCTGATATTGGATATTTTGAATTGGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGTGAAATGCGTATTGGGGATTTTCTTGCTGTGAAGGGACCGAAGGGGCGTTTCAAGTATCAACCTGGTCAAGTTCGAGAATTTGGAATGCTTGCTGGAGGCTCTGGCATTACTCCCATGTTTCAAGTCGCTAGAGCTATATTAGAAAACCCTAGTGACAGGACAAGAGTTCATCTTATTTATGCGAATGTTACATATGAAGATATTCTTTTGAAGGAGGAGCTAGATCTTCTTGCCACTAGATACCCTGATCAATTCAAGATCTACTACGTATTGAATCAGCCTCCTGAAGTTTGGGAAGGTGGTGTTGGCTTTGTGTCCAAGGAAATTATTCAAACACATTTCCCTGCACCTGCTCCTGGTATTCAGATTCTAAGGTGCGGTCCGCCGCCCATGAACAAAGCCATGGCCTCCCACCTTGAAGGTCTTGAATATACACCTGAAATGCAGTTTCAGTTCTGA 843 42.7 MEFLQTLDTQFLLSLSIAFVAIVFAAIFLFFSNKRTPKDCLDPEKFNKFKLIKRTKLSHNVAKFTFILPTPTSVLGLPIGQHISCRGKDSQGEDVVKPYTPTTLDSDIGYFELVIKMYPQGRMSHHFREMRIGDFLAVKGPKGRFKYQPGQVREFGMLAGGSGITPMFQVARAILENPSDRTRVHLIYANVTYEDILLKEELDLLATRYPDQFKIYYVLNQPPEVWEGGVGFVSKEIIQTHFPAPAPGIQILRCGPPPMNKAMASHLEGLEYTPEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31079199 31102696 + evm.model.ptg000004l.711 HCH11g0670 554137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0670 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 24 280 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
HCH11g0670 280 SUPERFAMILY Riboflavin synthase domain-like 40 149 IPR017938 -
HCH11g0670 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491(InterPro)
HCH11g0670 280 CDD cyt_b5_reduct_like 49 280 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
HCH11g0670 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
HCH11g0670 280 Gene3D Translation factors 39 138 - -
HCH11g0670 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
HCH11g0670 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491(InterPro)
HCH11g0670 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491(InterPro)
HCH11g0670 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491(InterPro)
HCH11g0670 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
HCH11g0670 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
HCH11g0670 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
HCH11g0670 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 275 IPR039261 -
HCH11g0670 280 Gene3D - 139 280 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0670 K00326 - - rcu:8268574 456.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0670 HCH-Chr11:31079199 HCH9g0948 HCH-Chr9:7043145 1.60E-134 dispersed
HCH11g0670 HCH-Chr11:31079199 HCH12g0785 HCH-Chr12:5069167 2.80E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86