Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0703 ATGATATGGTACTTCAATGGAACAATTGTGTATTCCGACATAATTGAAGCTGCAGAGGAATTTGATGATCAGTACTGCATAGGGGAAGGAGGGTCAGGAAAAGTTTACAAAGTGGAAATGCCTGAGGGTGAGGTATTTGCAGTGAAGAAGCTACATTCTTGGGATGATGAATTAGGAAATCAGAATAACAAGGATTTTGAAGAAGAAATAGCAGCTTTGACAGAAATAAGACACAAGAACATTGTGAGGTTGTATGGATTATGTCATAGAATAGATCATACATTTTTAGTTTATGATTATATTGAAAGAAGAAGCTTAACTCAGGTACTGAGCATTGAAAATGAAGCAAAGGATTTTAACTGGTCGAAAAGGATCGAGGTTGTGAAAGGCGTTGCCGATGCATTATCTTATCTTCATCATGATCGTGAGCATCCGATTATACATCAAGACATAACAGGAAACAATGTCTTCTTGGATTCAGAATTTGAAGCACATGTTGCAGATTTTTGCACCGTAAGATTTTTGAAGCCTGATGAGTCCTACTGGACAACAGTTGCAACCACTCAAGGCTATGTTGCACCAGAGCTTGCATCCACAATGGAGGCAACTGAAAAATGCGATGACTATAGCTTTGGTGTCGTGGCACTTGAAGTTTTGATGGGAAATCCTCTGAAAGATCTTATTCTAACATTGCATTCTTCATCAGATAACAACATTGAATTGAAAGACATCTTGGACTCACGTCTCTTGCCCCCTCAAAATCAAAGAATAGTAAGTGACTTGACTTTGTTAATGATTCTAGCAATCTCGTGTGTGCATGTTGATCCCCAATCACAACCAACTATGCAAAGAGTGTGTCAATTGCTGGAAACGCATGCTACAAGATGGTTCCTTGCACTTATGGTTGTTCATATTGTACTTACGATTGTTCTTTGTAAAAAGAATACATGTCCAATTAAGAGACTAAACACCATCCTAAAGAACCAAGGCCTAGAATGGGGAGCACGTCTTCCATCCGATGTCACGGCGTAA 1032 38.95 MIWYFNGTIVYSDIIEAAEEFDDQYCIGEGGSGKVYKVEMPEGEVFAVKKLHSWDDELGNQNNKDFEEEIAALTEIRHKNIVRLYGLCHRIDHTFLVYDYIERRSLTQVLSIENEAKDFNWSKRIEVVKGVADALSYLHHDREHPIIHQDITGNNVFLDSEFEAHVADFCTVRFLKPDESYWTTVATTQGYVAPELASTMEATEKCDDYSFGVVALEVLMGNPLKDLILTLHSSSDNNIELKDILDSRLLPPQNQRIVSDLTLLMILAISCVHVDPQSQPTMQRVCQLLETHATRWFLALMVVHIVLTIVLCKKNTCPIKRLNTILKNQGLEWGARLPSDVTA 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34574877 34576234 + evm.model.ptg000004l.678 HCH11g0703 554170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0703 343 PANTHER LEUCINE RICH REPEAT KINASE 2 2 291 IPR051420 -
HCH11g0703 343 SUPERFAMILY Protein kinase-like (PK-like) 12 305 IPR011009 -
HCH11g0703 343 FunFam Leucine-rich repeat receptor protein kinase MSP1 1 100 - -
HCH11g0703 343 Gene3D Transferase(Phosphotransferase) domain 1 101 297 - -
HCH11g0703 343 ProSiteProfiles Protein kinase domain profile. 21 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0703 343 Gene3D Phosphorylase Kinase; domain 1 4 100 - -
HCH11g0703 343 Pfam Protein kinase domain 26 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0703 343 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
HCH11g0703 343 ProSitePatterns Tyrosine protein kinases specific active-site signature. 146 158 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0703 HCH-Chr11:34574877 HCH11g1107 HCH-Chr11:42652108 1.50E-131 dispersed
HCH11g0703 HCH-Chr11:34574877 HCH13g0752 HCH-Chr13:6690896 7.20E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81060 PF00069 Pkinase 2.20E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0703 - - - 0.0