Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0739 ATGCCTCTTCTCAAACTCCATTCATCTTTTCTACTTCTTTTTATCCTCTCCTTCTTGAACCCTTTTGTTTCAGGACTGTCGCCTAATGTCGATGTTGATATCGATGCCGATATCCTACTTCGTGTTAAAAACACCTATCTGGACGACCCGAATGACTCCCTCAAGAATTGGGTTCGCAATGATCATCGCTACAACGCATGTAATTGGACTGGGATTACATGCGATGAAACGAATTCGTCGGTCGTTTCGATCGACTTGAATAGTTTCGGTGTCGCGGGGAGATTCCCGTTCGATTTCTGCCGGATACAGACACTTAAAAACCTCTCCCTCGCCAACAATGACATCAATGGCAGCCTTCCAACACACTCCCTCTCTCTCTGCTCTCACCTACAAGTACTCAATATATCCGGTAACTTACTCGTCGGCAAGTTACCGGAGTTTTCTCCCGATTTCACGAAACTACAAATCCTTGATCTCTCCAGAAACAACTTTTCAGGGGGAATTCCGGAGAGTTTTGGCCGATTATCGGAACTAAGATTACTCTTTTTATCTAGTAATATCCTCGACGGGACAATCCCTTCTTTCTTATGTAATCTCAGAAAGCTAACTCAATTAGTCCTTGCTTATAATCCATTCAAACCGAGCCCGTTACCTTCCGATATCGGCAATCTCTCGAAGCTTGAAAATATATTTTTACCGAACACGAATCTCATCGGGGTCTTACCGGAATCCATTGGCAAACTCACGTTGCTAACAAATCTTGATTTAATGACCAATTCTCTTTCAGGAAAAATACCAAATTCAATTGGTGGATTGAAAAACGTGAAGCATATTCAGTTATATGCTAACAAATTTTCCGGTGAGTTACCGGAGAGTATTGCTAATTTAACAAATCTACTCACGTTCGACGTCTCACAGAATTGTCTCACCGGAGAATTATCAGCAAAAATCGCTGCTTTACCTCTCCAAATTCTGCATCTCAATGACAATTTCTTTGAAGGAGAAGTTCCAGAGATTTTAGCTTCCAATCATAGGCTCTCTGGATTGAAGCTTTTCAATAATAGCTTTTCTGGAAAGTTACCGAAAAATCTCGGTCTCAATTCTGATTTGATAGATTTCGACGTCTCTACCAACAAGTTCGAAGGTGAATTACCCGAGTTTCTCTGTCACAGAAACAAACTGCAACGTATTATTATGTTTAAGAACAAATTTTCTGGGAATTTGCCGGAATCGTACGGTCATTGCAGTTCTCTCTATTATGTTAGAATTGAAAGCAATCAACTTACAGGAGAAATACCAGACTCGTTTTGGAATCTTTCTCAGCTCAGTCTAGTCCAGATTTTCGATAACAGATTTGAAGGTTCGGTTCCGCCGTCGATAAGCGGAGCTCGCTATCTCACAGTACTTTTGATGTCGGGAAACAACTTCTCCGGTGAGTTACCGGTGGAGATTTGTGAACTGGGAGAACTCGAACGATTCGACGTCGCGAAAAATAAATTTTCCGGCCATGTTCCTTCATGTATAACGGAATTGAAGAAACTACAGAAGCTTGACATGCAAGAAAACAACTTCACCGGGGAAATTCCCAAGTCAGTTGAGTCATGGAAAGAGTTAACCGAATTGAATCTCTCTCAAAACCAATTTTACGGTTCGATTCCGCCGCAACTCGGCGATTTACCAGTTTTAACATACTTAGACCTCTCCAAAAATTCACTCTCCGGCAAAATTCCCGAGGAATTGACGAAATTGAAGCTAAACGAATTCAATTTATCAGACAACAAACTGTACGGGAAAGTTCCATCAGGCTTCGACAACGAACTTTACGTATCAAGTTTACAGGGCAATGAAGATCTTTGTAGCCCTGATTTGAAACAATTGCAACCATGTCGTAAACCGAAGCCCGCGACATTCTACGTTGTCGTCGTGCTGTTGGTTTTGGCGCTGCTTCTTGTCGGATCTCTTATTTGGGTGGTTAAATCCAAGTTTAAGTTGTTTAGGAAATCAAATTCTCCATGGAAAGTGAGTGTGTTTCAAAGGGTGGGATTTGATGAGGAAGATGTGATTCCTCATATAACAAATTCGAATTTAATTGGAACCGGTGGGTCTGGGAGTGTGTTTAAAGTGAAGGTGAAAACGGGTCAGATTGTTGCTGTGAAGAGTCTTTGGGGAGGAGGCGGCGGCCACGAAAAGTCCGAAAGCGAAACGGTGTTTCATTCGGAAGTAGAGACGTTGGGTCGGATTCGGCATAGTAATATTGTGAAGTTGTTGTTGAGTTGTAGCAATGGAGAAGGAAGTAGGATTCTTGTTTATGAGTTTATGGAAAACGGAAGCTTGGGGGATGTGTTGCATGAGAAGAAATGTGAGGCTTTGTCTGATTGGGAAAAGAGGTTTGATATAGCATTGGGAGCGGCCTTGGGATTGGCTTACCTTCACCATGATTGTGTTCCTCCTATAATTCACCGGGACGTCAAGAGTAATAATATTCTGTTGGATGGAGACTTCAGGCCCCGCGTAGCCGATTTTGGGTTGGCGAAGACGCTGCAGCGCGATAAGGTGGGTGATGGCGGCAGTGGTGGGGGAGGCGGAGGCTCCATGTCTCGCGTTGCTGGTTCCTATGGCTACATTGCCCCTGAGTATGGATACACGATGAAAGTGACAGAAAAGAGTGACGTGTATAGTTTCGGGGTAGTTTTGATGGAATTGGTGATGGGAAAGAGACCGAATGATGTGTGTTTTGGAGAGGATAAAGGGATAGTGAAATGGGTGAGGGAGGCTGCTTTGGATGAGAAAATGGTAGCGGTGGGGTTGGACGAAATAATTGATGAAAAATTGGATCCATCAACATGTGAAATAGAAGAGATAGTGAAGATGTTGGATGTGGCGTTACTTTGCACCTCTGCTTTGCCCGTCGACAGACCCTCCATGAGAAGAGTAGTTGAATTGATTAAGGATACCAAGTCGCCTACTCTCAAATCTTGA 2979 43.07 MPLLKLHSSFLLLFILSFLNPFVSGLSPNVDVDIDADILLRVKNTYLDDPNDSLKNWVRNDHRYNACNWTGITCDETNSSVVSIDLNSFGVAGRFPFDFCRIQTLKNLSLANNDINGSLPTHSLSLCSHLQVLNISGNLLVGKLPEFSPDFTKLQILDLSRNNFSGGIPESFGRLSELRLLFLSSNILDGTIPSFLCNLRKLTQLVLAYNPFKPSPLPSDIGNLSKLENIFLPNTNLIGVLPESIGKLTLLTNLDLMTNSLSGKIPNSIGGLKNVKHIQLYANKFSGELPESIANLTNLLTFDVSQNCLTGELSAKIAALPLQILHLNDNFFEGEVPEILASNHRLSGLKLFNNSFSGKLPKNLGLNSDLIDFDVSTNKFEGELPEFLCHRNKLQRIIMFKNKFSGNLPESYGHCSSLYYVRIESNQLTGEIPDSFWNLSQLSLVQIFDNRFEGSVPPSISGARYLTVLLMSGNNFSGELPVEICELGELERFDVAKNKFSGHVPSCITELKKLQKLDMQENNFTGEIPKSVESWKELTELNLSQNQFYGSIPPQLGDLPVLTYLDLSKNSLSGKIPEELTKLKLNEFNLSDNKLYGKVPSGFDNELYVSSLQGNEDLCSPDLKQLQPCRKPKPATFYVVVVLLVLALLLVGSLIWVVKSKFKLFRKSNSPWKVSVFQRVGFDEEDVIPHITNSNLIGTGGSGSVFKVKVKTGQIVAVKSLWGGGGGHEKSESETVFHSEVETLGRIRHSNIVKLLLSCSNGEGSRILVYEFMENGSLGDVLHEKKCEALSDWEKRFDIALGAALGLAYLHHDCVPPIIHRDVKSNNILLDGDFRPRVADFGLAKTLQRDKVGDGGSGGGGGGSMSRVAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVMGKRPNDVCFGEDKGIVKWVREAALDEKMVAVGLDEIIDEKLDPSTCEIEEIVKMLDVALLCTSALPVDRPSMRRVVELIKDTKSPTLKS 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35953075 35956297 - evm.model.ptg000004l.642 HCH11g0739 554206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0739 992 Pfam Leucine Rich Repeat 562 583 IPR001611 GO:0005515(InterPro)
HCH11g0739 992 Pfam Leucine Rich Repeat 466 487 IPR001611 GO:0005515(InterPro)
HCH11g0739 992 Pfam Leucine Rich Repeat 417 439 IPR001611 GO:0005515(InterPro)
HCH11g0739 992 Pfam Leucine Rich Repeat 513 534 IPR001611 GO:0005515(InterPro)
HCH11g0739 992 Pfam Leucine Rich Repeat 538 559 IPR001611 GO:0005515(InterPro)
HCH11g0739 992 SUPERFAMILY RNI-like 107 589 - -
HCH11g0739 992 Pfam Protein kinase domain 693 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0739 992 FunFam Leucine-rich repeat receptor-like protein kinase 773 992 - -
HCH11g0739 992 Gene3D Ribonuclease Inhibitor 32 215 IPR032675 -
HCH11g0739 992 Pfam Leucine rich repeat 153 211 IPR001611 GO:0005515(InterPro)
HCH11g0739 992 SUPERFAMILY Protein kinase-like (PK-like) 683 981 IPR011009 -
HCH11g0739 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0739 992 FunFam Leucine-rich repeat receptor-like protein kinase 32 194 - -
HCH11g0739 992 Gene3D Transferase(Phosphotransferase) domain 1 773 990 - -
HCH11g0739 992 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524(InterPro)
HCH11g0739 992 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
HCH11g0739 992 ProSiteProfiles Protein kinase domain profile. 691 990 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0739 992 Gene3D Phosphorylase Kinase; domain 1 682 772 - -
HCH11g0739 992 FunFam Leucine-rich receptor-like protein kinase family protein 217 315 - -
HCH11g0739 992 Gene3D Ribonuclease Inhibitor 320 635 IPR032675 -
HCH11g0739 992 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 25 984 IPR050647 -
HCH11g0739 992 SUPERFAMILY L domain-like 360 456 - -
HCH11g0739 992 FunFam Receptor-like protein kinase HSL1 321 627 - -
HCH11g0739 992 SMART serkin_6 691 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0739 992 Gene3D Ribonuclease Inhibitor 216 319 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0739 HCH-Chr11:35953075 HCH7g0287 HCH-Chr7:2022882 1.20E-83 dispersed
HCH11g0739 HCH-Chr11:35953075 HCH11g0741 HCH-Chr11:36103677 9.00E-76 proximal
HCH11g0739 HCH-Chr11:35953075 HCH14g0408 HCH-Chr14:33088540 9.00E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81061 PF00069 Pkinase 1.30E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0739 - - - 0.0