Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0741 ATGCAGCTTCTTCATCTTCTTCTTCTTCCTCTGTTTCTCCTCCAAATAAACCAATCCATTTCTCTCCATTTACCAGAATACCTTGCTCTCCTCTCTCTCAAAAACTCCCTTTCCTCTGACTCTCAATCTCTCCTCTCAACATGGAACACCACTACCAACCACTGCACATGGACCGGAGTCACGTGCGATATCCGCCGCCACGTCACCGCTCTAAACCTCTCCGGAATGAATCTCTCCGGCACCATCTCCCCCGACATTTCCAATCTCCGTTTCCTTAAAAATCTCAATCTCTCCAACAATATCATTAACGGCACATTCCCTTCTCACCTCTCACTCCTCAAAAACCTTCAAGTTCTTGATTTGTATAACAACAACATGTCTGGAAACTTGCCGCTTTCCGTTATTGAGCTACCCCAGCTTCGTCATTTGCATCTCGGAGGTAACTTTTTCTCCGGTGAGATTCCGCCGGAGTACGGTCGTTGGGAGTTTTTGGAGTATTTGGCGGTGTCGGGAAATGAGCTTCAAGGTTCTATTCCGCCCGAGATTGGGAATTTGACGAAGCTTCGTGAGCTCTATATTGGGTATTATAATGTTTATGACGGTGGTTTGCCGCCGGAGATCGGGAACTTATCGGAATTGGTGAGGTTGGATGCGGCTAACTGTGGTTTAACGGGTGAGATTCCAAGGGAAATTGGGAAGCTTGAGAAATTGGATACATTGTTTCTTCAAGTTAATGGGTTATCTGGGTCTTTGATTCCGGAGCTTGGGATGTTGAAAAATATGAAATCTATGGATTTGTCTAACAATGTTCTTGTTGGGGAAATTCCAAACTCGTTTTCTCAATTGACGAGTTTGACTCTTTTGCATCTTTTTAGGAATAAGCTTCATGGGGCTATTCCTGAGTTTATTGGTGAGTTACCGGAGTTGGAAGTGTTGCAGTTGTGGGAAAATAACTTTACTGGGTCTATTCCTTTTGGTCTTGGAAAAAATGGGAAGCTTTTGGTTCTTGATCTTTCGTCGAATAAATTAACTGGAACTTTGCCTCCTGATTTGTGTTATGGGAATAAGCTTGAGACATTGATTACTCTTGGTAACTTCTTGTTTGGTTCTATCCCGGAATCGTTAGGGAAATGTGTGTCATTACGCCGTATTCGAATGGGGGAGAATTTTCTCAATGGTACTATCCCATTGGGTCTTTTTGGGTTGCCTAATCTGTCCCAAGTTGAGTTGCAGGATAATTTTCTTACTGGGGAGTTTCCAATTATTGATTCGGTTTCGATCAATCTCGGTCAGATTAGTCTCTCGAACAATCAGCTTTCGGGGTCATTGCCACCGATGATTGGGAACTTCTCTGGTATTCAGAAGCTTTTGCTTGATGGGAACATGTTTTCGGGTCGGATTCCTCCTGAAATTGGGAGGTTACAGCAGCTTTCGAAGATTGATTTTAGTCATAATAAGTTTTCAGGTCCTTTGGCGCCTGAGATTAGTCGCTGTAAGCTGTTGACGTTTGTTGATCTTAGTCGTAACGAGCTTTCGGGTGAGATTCCGAATGAGATTACGACAATGAGGATATTGAATTATCTGAATCTCTCAAGAAATCATTTAGTTGGCAGTGTTCCTGCCTCAATATCATCAATGCAAAGCTTGACATCAGTTGATTTCTCATATAACAATCTCTCTGGTTTGGTTCCGGGCACTGGTCAATTTAGCTACTTCAATTACACGTCGTTTCTCGGCAACCCTGATCTTTGCGGCCCGTATTTGGGACCTTGTAAAGATGGGGTCGTCAATGGCACACAACAACCTCGTGTGAGAGGCTCTCTCTCTGGTTCTGTGAAGCTAATGCTTGTTATTGTATTGCTTGTTTGCTCCATTGCTTTTGCAATTGCAGCAATCATTAAAGCTCGGTCATTAAAGAGAGCAAGCGACTCCCGTGCTTGGAAATTAACGGCATTTCAACGATTAGATTTCACAGTAGATGATGTTTTGGATTGCTTGAAGGAGGATAACATCATTGGAAAAGGCGGTGCTGGCATTGTCTACAAAGGTTTTATGCCGAGTGGTGATCGGGTTGCTGTGAAAAGGCTGCCGGTAATGAGTCGAGGGTCGTCTCACGACCACGGATTCAATGCTGAGATACAAACTTTAGGGAGGATAAAACATAGACACATTGTTAAACTCTTGGGTTTCTGCTCAAACCATGAAACAAATCTTCTGGTCTATGAATATATGCCTAATGGGAGCTTAGGTGAAGTTCTTCATGGCAAGAAAGGTGGGCATTTGCAGTGGCACACAAGGTATAAGATTGCAATAGAAGCTGCTAAAGGGCTTTGCTATTTACATCACGATTGCTCGCCGTTGATTGTGCATCGAGATGTGAAATCGAACAACATTTTACTAGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGACTTGCTAAGTTTCTACAGGATTCAGGCACATCAGAATGCATGTCTGCAATAGCTGGTTCTTATGGATATATAGCACCAGAATATGCTTACACGCTGAAGGTTGACGAGAAGAGTGATGTTTACAGTTTTGGTGTAGTACTTTTAGAACTGGTGAGTGGCCGAAAACCGGTAGGAGAATTCGGGGACGGAGTCGATATAGTTCAATGGGTGAGGAAAATGACGAGCTCAAATACCGAAGGAGTTTTGAAAATTATTGATCCAAGGCTGTCATCAGTCCCCCTTAGTGAAGTAATGCATGTTTTCTACGTAGCAATGCTTTGTGTGGAAGATCAAGCCGTGGAAAGACCAACAATGAGAGAAGTGGTTCAAATTCTCACAGAACTCCCAAAGCCAACAACTAATTCAAAACAGGTGAGCTCAAGGGAAGCTGAATTATCCCCACCACAACTACCACCCTCATTACCACCGGCGATAGCGGCATCCGCTGCTGCAGCCGTGGCATTAACTTCTCCAAACAAAACAGTGAAGAACAGACAAGACAACAACCAGCCACCACATGATCTCCTTAGCATTTGA 3012 43.39 MQLLHLLLLPLFLLQINQSISLHLPEYLALLSLKNSLSSDSQSLLSTWNTTTNHCTWTGVTCDIRRHVTALNLSGMNLSGTISPDISNLRFLKNLNLSNNIINGTFPSHLSLLKNLQVLDLYNNNMSGNLPLSVIELPQLRHLHLGGNFFSGEIPPEYGRWEFLEYLAVSGNELQGSIPPEIGNLTKLRELYIGYYNVYDGGLPPEIGNLSELVRLDAANCGLTGEIPREIGKLEKLDTLFLQVNGLSGSLIPELGMLKNMKSMDLSNNVLVGEIPNSFSQLTSLTLLHLFRNKLHGAIPEFIGELPELEVLQLWENNFTGSIPFGLGKNGKLLVLDLSSNKLTGTLPPDLCYGNKLETLITLGNFLFGSIPESLGKCVSLRRIRMGENFLNGTIPLGLFGLPNLSQVELQDNFLTGEFPIIDSVSINLGQISLSNNQLSGSLPPMIGNFSGIQKLLLDGNMFSGRIPPEIGRLQQLSKIDFSHNKFSGPLAPEISRCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLVGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVVNGTQQPRVRGSLSGSVKLMLVIVLLVCSIAFAIAAIIKARSLKRASDSRAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGFMPSGDRVAVKRLPVMSRGSSHDHGFNAEIQTLGRIKHRHIVKLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWHTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSSNTEGVLKIIDPRLSSVPLSEVMHVFYVAMLCVEDQAVERPTMREVVQILTELPKPTTNSKQVSSREAELSPPQLPPSLPPAIAASAAAAVALTSPNKTVKNRQDNNQPPHDLLSI 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36103677 36106959 - evm.model.ptg000004l.640 HCH11g0741 554208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0741 1003 Gene3D Ribonuclease Inhibitor 303 595 IPR032675 -
HCH11g0741 1003 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 62 302 - -
HCH11g0741 1003 ProSiteProfiles Protein kinase domain profile. 666 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0741 1003 Gene3D Transferase(Phosphotransferase) domain 1 744 958 - -
HCH11g0741 1003 SUPERFAMILY Protein kinase-like (PK-like) 659 937 IPR011009 -
HCH11g0741 1003 Gene3D Phosphorylase Kinase; domain 1 633 743 - -
HCH11g0741 1003 SUPERFAMILY L domain-like 275 591 - -
HCH11g0741 1003 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 744 954 - -
HCH11g0741 1003 Gene3D Ribonuclease Inhibitor 177 278 IPR032675 -
HCH11g0741 1003 Gene3D Ribonuclease Inhibitor 25 176 IPR032675 -
HCH11g0741 1003 SMART LRR_typ_2 474 498 IPR003591 -
HCH11g0741 1003 SMART LRR_typ_2 331 354 IPR003591 -
HCH11g0741 1003 SMART LRR_typ_2 137 161 IPR003591 -
HCH11g0741 1003 SMART LRR_typ_2 306 330 IPR003591 -
HCH11g0741 1003 SMART LRR_typ_2 546 569 IPR003591 -
HCH11g0741 1003 SMART LRR_typ_2 258 281 IPR003591 -
HCH11g0741 1003 Pfam Protein kinase domain 668 935 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0741 1003 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
HCH11g0741 1003 MobiDBLite consensus disorder prediction 981 1003 - -
HCH11g0741 1003 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 940 IPR050647 -
HCH11g0741 1003 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 310 595 - -
HCH11g0741 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0741 1003 SMART serkin_6 666 936 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 428 450 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 213 234 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 139 159 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 333 352 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 501 521 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 115 133 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
HCH11g0741 1003 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 635 743 - -
HCH11g0741 1003 MobiDBLite consensus disorder prediction 943 958 - -
HCH11g0741 1003 MobiDBLite consensus disorder prediction 943 968 - -
HCH11g0741 1003 SUPERFAMILY RNI-like 71 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0741 HCH-Chr11:36103677 HCH14g0409 HCH-Chr14:33102975 8.90E-23 dispersed
HCH11g0739 HCH-Chr11:35953075 HCH11g0741 HCH-Chr11:36103677 9.00E-76 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81062 PF00069 Pkinase 2.70E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0741 - - - 0.0