Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0743 ATGCTTGACAAAGAATTTTTCACAGAATATGGGGAAGCTACTCAATATGAAATTCAGGAGGTTATAGGAAGAGGAAGTTATGGTGTTGTTGCATCTGCTGTAGATACTCACACTGGTGAGAAAGTTGCCATCAAGAAGATAAATGATGTCTTCGAGCATGTTTCCGATGCCACGCGAATTCTGCGTGAAGTTAAGCTTCTACGCCTTCTTCATCATCCCGATATTGTCGATATAAAACATATAATGCTCCCTCCATCAAGAAGGGAGTTTAAGGATTTGTACATTGTATTTGAGTTGATGGAGTCTGATCTTCATCAAGTACTCAGGGCTAATGATGATCTTACCCCGGATCATCATCAATTCTTCTTGTATCAGCTTCTTAGAGCCTTGAAGTACATACATTCAGCACACGTGTTCCATAGAGATTTGAAGCCAAAGAATATACTTGCCAATGCTGACTGTAAATTGAAGATCTGCGACTTCGGGCTTGCTCGTGCTTCTTTTACTGATGCGCCATCAGCTATTTTCTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCCGAACTCTGTGGTTCTTTTTTCTCGAAGTATACACCAGCTATCGACATTTGGAGCATAGGATGTATATTTGCTGAAATGTTGGCTGGGAAACCCTTGTTTCCTGGGAGGAGTGTTGTCCATCAACTAGATCTAATAACTGATTTACTTGGCACTCCTACTGCTGACTCTATTGCCAAGATTCGTAATGAAAAGGCTAAAAGATATTTGAATAGCATGAGAAAAAAGCATCCAATTGCTCTCTCAAGAAAGTTCCCTAATGCAGATCCGCTAGCTCTTCGTTTACTCGAGCGTTTGCTTGCTTTTGATCCTAATGACCGACCATCCGCTGAAGATGCATTAGCTGATCCATATTTCTATGGACTTGCAAATGTGAAGAACGAACCATCCATGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAATTGATCAAAGATGATGTCAGAGAGCTTATCTATAGAGAAATCCTAGAGTATCATCCTCAGATGCTACAAGAGTACCTTCAAGGTTCTGAGAGTCACTTCATGTATCCTAGTGGAATTGATCGATTTAAGCGACAATTTGCTAATCTCGAGGATCATTATGGTAAAGGTGAAAAAAGCAGCAAACCACTTCAAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATGTACACCAAGAGATGTAGACGACCGTAAAAATTGTAAAACAGAAAAGCGCAATGCAGTTTCAGTTGATCGTGCAACCCTTCAGAGCCCTCCAAGATCAAAAGGGCTGGACAATCCTGCAACAACTTATTCAAAAACTGTCCAGAATGGTCCAATCAAAGCTGACTCCAGTAATTATAGCCTGTTGAAGAGTGCAAGTATAAATTGTTCAAAATGGGTGGATCTAAAAGGCAAAGATTGCACTGAAGAAAGAATACCTGAATATTGCTAG 1494 40.76 MLDKEFFTEYGEATQYEIQEVIGRGSYGVVASAVDTHTGEKVAIKKINDVFEHVSDATRILREVKLLRLLHHPDIVDIKHIMLPPSRREFKDLYIVFELMESDLHQVLRANDDLTPDHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFTDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGRSVVHQLDLITDLLGTPTADSIAKIRNEKAKRYLNSMRKKHPIALSRKFPNADPLALRLLERLLAFDPNDRPSAEDALADPYFYGLANVKNEPSMQPISKLEFEFERRKLIKDDVRELIYREILEYHPQMLQEYLQGSESHFMYPSGIDRFKRQFANLEDHYGKGEKSSKPLQRKHASLPRERICTPRDVDDRKNCKTEKRNAVSVDRATLQSPPRSKGLDNPATTYSKTVQNGPIKADSSNYSLLKSASINCSKWVDLKGKDCTEERIPEYC 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36188735 36191553 + evm.model.ptg000004l.638 HCH11g0743 554210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0743 497 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524(InterPro)
HCH11g0743 497 Pfam Protein kinase domain 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0743 497 CDD STKc_TDY_MAPK 15 352 - -
HCH11g0743 497 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 348 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH11g0743 497 FunFam Mitogen-activated protein kinase 102 330 - -
HCH11g0743 497 MobiDBLite consensus disorder prediction 429 458 - -
HCH11g0743 497 Gene3D Transferase(Phosphotransferase) domain 1 102 330 - -
HCH11g0743 497 Gene3D Phosphorylase Kinase; domain 1 32 353 - -
HCH11g0743 497 MobiDBLite consensus disorder prediction 386 405 - -
HCH11g0743 497 FunFam Mitogen-activated protein kinase 5 108 - -
HCH11g0743 497 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0743 497 SUPERFAMILY Protein kinase-like (PK-like) 13 311 IPR011009 -
HCH11g0743 497 SMART serkin_6 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0743 497 MobiDBLite consensus disorder prediction 425 458 - -
HCH11g0743 497 ProSiteProfiles Protein kinase domain profile. 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0743 HCH-Chr11:36188735 HCH6g1629 HCH-Chr6:49363903 6.50E-192 dispersed
HCH13g0999 HCH-Chr13:24577761 HCH11g0743 HCH-Chr11:36188735 1.00E-19 transposed
HCH8g1125 HCH-Chr8:46964354 HCH11g0743 HCH-Chr11:36188735 5.30E-207 transposed
HCH11g0743 HCH-Chr11:36188735 HCH7g0055 HCH-Chr7:379128 1.30E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81063 PF00069 Pkinase 6.40E-68 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0743 - - - 0.0