Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0748 ATGGCCATCTCTCTTCTTGGAATCCTTAGAAAGCATTTTCATGTTGTTCAGTTTTTTATGATCTTATTCTCTTTTATTCACTTTAGAGTGCAATCCTTTTCCTTCAGCTTTCCTAGTTTTGAGCAAAACATGCCTGACTTATTCATTGAAGGTGATAGCTTTCTTAATGATCACGTTATTCAACTCACAAAGAATCAGGCAGACGGTCCGCTCACCGACAGCGCTGGCCGGGCTTCATACGCAAAGCAGGTGCGCCTTTGGGACGCGGCCACGGGAAAGGTGACAGACTTCACAACCCAATTCTCTTTTAGAATCAACACCCTTAATATGTCTTCTTTTGGTGATGGAATTGCCTTTTTTATAGTGCCTTTTGAGTCTAGACTTCCTGATAACTCAACTGGGGGTTTTCTGGGACTTTATAGTAATGAAACTGCTTTTGATTCTTCAAGAAATCAAGTTGTTGCTGTTGAGGTTGATAGTCGTCAAGACGAATGGGATCCGAGTGAAAATCATTTAGGAATCAATGTAAATTCCATTCAATCTGTGGCTAATGTTAAATGGAACAGTAGCATGAAGGATGGACGATTGGCGAATGCATGGATAAATTACAATTCCTCCACTCAAAATTTGTCTGTTTTTTTAACTTATGCTCAAAATCCTGTTTTCAATGGGAGTTTTAGTCTTTCTAATGTTGTTGATTTGAGAAGTAAATTGCCTGAAATGGTCAGAGTAGGTTTCTCTGCTGCCACAGGGAATTGGTTTCAGATACATAACATCATTTCTTGGTCATTTAATTCCACCTTGGAGATTGATGATGGAAATAGAAAAGATAACAAAACAGGCTTAGCAATCGGCTTAGCAGTTGGATTGAGTTTCTTTATTTGTGGGTTATGCTTGGTTGGGTATATCTATTGGAGAAAGAGAGCTAGCAAGAGAAATGACGATGTGGATATTTCTATGGATGATGAATTTGAAAAAGGGACTGGTCCAAAAAGGTTCACTTACCGGGAATTAACTCGAGTAACGAAGAATTTCGATGAGGCAGGAAAGCTTGGAGAAGGAGGGTTTGGAGGTGTTTATAAGGGTTTGCTAACAGAAGCCAATACAGAAATAGCTGTGAAGAGAGTCTCAAGAGGATCAAGACAAGGTAAAAAAGAGTATATATCTGAAGTGAAAATTATTAGTCGATTGAGACATAGAAATCTCGTTCAACTCTTCGGTTGGTGCCATGAACAAGGTGAGTTCCTTCTGGTCTATGAATTTATGCCCAATGGAAGTCTTGATTCCCATCTCTTTGGAGGAAAAATGATACTAACTTGGTCAGTACGATACAAAATAGCACTTGGTTTGGCCTCTGCCTTGTTGTATCTTCATGAAGAATGGGAACAGTGTGTTGTGCATAGAGATATCAAGTCAAGCAATGTAATGTTGGACTCAAATTTCAATGCCAAGCTAGGAGATTTCGGTCTCGCGAGGTTTGTTGATCATGAATTAGGTTCACAAACAACTGTCTTGGCAGGCACCATGGGCTATCTAGCTCCAGAGTGTGTCACAGATGGCAAGGCTAGCAAGGAATCTGATGTGTATAGTTTTGGAGTTGTTGCTCTTGAAATTGCATGCGGAAGGCGGCCAGTTGAATCGAGAGCCAAACCGGATCAAGTGAGGCTTGTAGAATGGGTTTGGGAGCTTTATGGAAAAGGCCAAATCCTAGAAGCTGTAGATAAGAGACTAGAAATGGAGTTTGATGAACAACAAATGGAGCATTTGATGGTTGTGGGATTGTGGTGTTCCCACCCTGACTACAAAATGAGACCTTCTATAAGACAAGTGATTAATGTCCTAAATTCTGAAGCTCCATTGCCTGCATTGCCATCAAAATTACCAGTGCCTACATATTTTGCACCACCAATGCACTTATGCAAGTTCTCGTATACATCGTCGGATACGACAAACTCGCCAGTAGATCGAAGTCAATGTTCATGTAGCAACTGCTCAACTTACACTACGCAGTCTTCTGGATCGAGTACATCTCTTTTGAAATTTTCAAGGCCTGTATTATAG 2061 40.42 MAISLLGILRKHFHVVQFFMILFSFIHFRVQSFSFSFPSFEQNMPDLFIEGDSFLNDHVIQLTKNQADGPLTDSAGRASYAKQVRLWDAATGKVTDFTTQFSFRINTLNMSSFGDGIAFFIVPFESRLPDNSTGGFLGLYSNETAFDSSRNQVVAVEVDSRQDEWDPSENHLGINVNSIQSVANVKWNSSMKDGRLANAWINYNSSTQNLSVFLTYAQNPVFNGSFSLSNVVDLRSKLPEMVRVGFSAATGNWFQIHNIISWSFNSTLEIDDGNRKDNKTGLAIGLAVGLSFFICGLCLVGYIYWRKRASKRNDDVDISMDDEFEKGTGPKRFTYRELTRVTKNFDEAGKLGEGGFGGVYKGLLTEANTEIAVKRVSRGSRQGKKEYISEVKIISRLRHRNLVQLFGWCHEQGEFLLVYEFMPNGSLDSHLFGGKMILTWSVRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNAKLGDFGLARFVDHELGSQTTVLAGTMGYLAPECVTDGKASKESDVYSFGVVALEIACGRRPVESRAKPDQVRLVEWVWELYGKGQILEAVDKRLEMEFDEQQMEHLMVVGLWCSHPDYKMRPSIRQVINVLNSEAPLPALPSKLPVPTYFAPPMHLCKFSYTSSDTTNSPVDRSQCSCSNCSTYTTQSSGSSTSLLKFSRPVL 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36519623 36521683 + evm.model.ptg000004l.633 HCH11g0748 554215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0748 686 CDD STKc_IRAK 359 615 - -
HCH11g0748 686 Gene3D Transferase(Phosphotransferase) domain 1 422 635 - -
HCH11g0748 686 FunFam Lectin-domain containing receptor kinase A4.3 422 634 - -
HCH11g0748 686 FunFam L-type lectin-domain containing receptor kinase IX.1 330 421 - -
HCH11g0748 686 SUPERFAMILY Protein kinase-like (PK-like) 329 649 IPR011009 -
HCH11g0748 686 FunFam L-type lectin-domain containing receptor kinase IX.1 31 277 - -
HCH11g0748 686 Pfam Protein kinase domain 347 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0748 686 CDD lectin_legume_LecRK_Arcelin_ConA 23 268 IPR001220 GO:0030246(InterPro)
HCH11g0748 686 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
HCH11g0748 686 PANTHER - 37 645 IPR050528 GO:0005886(PANTHER)
HCH11g0748 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0748 686 SMART serkin_6 345 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0748 686 ProSiteProfiles Protein kinase domain profile. 345 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0748 686 Gene3D - 30 282 - -
HCH11g0748 686 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524(InterPro)
HCH11g0748 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 272 IPR013320 -
HCH11g0748 686 Pfam Legume lectin domain 33 277 IPR001220 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0745 HCH-Chr11:36248988 HCH11g0748 HCH-Chr11:36519623 1.90E-176 dispersed
HCH11g0748 HCH-Chr11:36519623 HCH7g0800 HCH-Chr7:14169410 3.80E-182 dispersed
HCH11g0746 HCH-Chr11:36420514 HCH11g0748 HCH-Chr11:36519623 2.00E-305 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81066 PF00069 Pkinase 1.70E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0748 - - - 0.0