Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0750 ATGAAGCAATGGAGTTGGATCCTTTGGTTCTCAGCCATGGCAGTCCTCCTCCTCTTCTTCCTCCACGGTATCGATAACGACCATCGGAAAGCTCCCGTAATTAGGAGATTACTGAGGAAATCTAACAGCAATCATTCTTCAGTGATGTTTGGGGTCAAAATAGTAACAAGACCTGCACATGTGGTGTTGGATAATGGCATTGTCCAGGTTCATATATCAACTCCAGATGGTGATGTGACTGGAGTAAGCTACAATGGAATCGAAAACTTACTCGAAACTAAAAATGAAGATGATAATAGGGGGTATTGGGATGCTGTTTGGAATAAACCGGGCCAACACATTTCCACTGACAGAATAAGAGGATCGAGTTTCCGAGTGATAGTGGCAAATGAGAATCAAGTGGAAATCTCATTCACTAAATCATGGAGTTTGTCGGAAGACTCGACGACGGCTCCCGTTAACGTCGATAAACGGTATATATTGATGCGAGGGAGATCAGGGTTTTATACGTATGCAATATTTGAGAGACCTGAGGGTTGGCCTGGGATTGAAATGGACCAAGTTAGGATCGTTTACAAGCTCCAAAGCCAAAAGTTTTCATATATGGCGATAGCTGATAGGAAGCAGAGAGTGATGCCAACGCTTGAAGACCGAGAAAGGGGTCGCCCCTTGGACTATCCAGAGGCTGTTCTTTTGACCAATCCTGCCAATACGACTCTAAAAGGAGAGGTGGATGACAAGTACCAATACTCAAGCGAGGACAAGGACAACAAAGTTCACGGTTGGATTTGTGAAAATCCGCCGACGGGATTCTGGATGATAACTCCTAGTGACGAGTTTCGAGTTGCTGGGCCCCTCAAGCAGGATCTCACCTCTCATGCTGGCCCTATAACTCTCTCCATGTTTGTCAGCACTCATTACTCCGGAAGAGACGTGGGCATGAAATTTGCAGAAGGTGAGCCTTGGAAGAAGGTTTTTGGCCCCGTTTTCGTTTATCTCAATTCCTTTCCTAGACAAGAAGATTCTCTCTCACTCTGGGAAAATGCCAAACAGCAGTTCGTGACAGAAGAGAATGCATGGCCATATAGTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGAACAAAGAGGAACAGTTTCTGGTCGTTTATTAGTCCGTGACATGTACATCACCAGGAAGCGACTGATGCGTGCTAGTAACGCTTTTGTTGGATTAGCATTGCCAGGAATACTAGGATCTTGGCAAAGGGAATCCAAAGGTTATCAGTTTTGGACTGAAGCTGACAATCATGGCAATTTCTTGATAAAAAATGTCAGAGCTGGTGTCTATAATTTGTACGCTTTTGTTCCTGGCTTCGTTGGAGACTATAAATATGAGTCCATTATTACAATTCACCCCGGGTGTCAAATTAATCTTCAAGCTTTGGTGTTTGATCCGCCGAGACAAGGTCCGACTCTTTGGGAAATCGGCGTTCCCGATCGCACCGCTGCTGAATTTTACGTGCCCGACCCGTATCCAAACCTTGTGAATAAACTGTATATTAATAATCAAGAAAAGTTTAGACAGTACGGCTTGTGGAGACGTTATGCCGATTTGTATCCTCACGATGATCTTGTCTTTACCATTGGTATTGATGATTATAGGAAGGACTGGTTTTATGCTCATGTTACCAGGGAGATTGGAAATGGAATATACGAACCAACCACTCGACAGATCAAATTTTCGCTTCGAGCCGTGAACCAATTCGCTAATTACACGCTTCAAATTGCATTAGCATCAGCTGCTGAATGTGAATTGCAGGTTCGAGTCAATGATCGAAACACGACACGGCCTGTTTTTACGACAGGGTTCATTGGAAGGGACAATGCCATTGCCAGGCATGGAATCCATGGACTATACTGGTTTTACAGCATAAATTTGCCTGGCAATCTACTTCTGAAAGGGGAAAACTCCATCTTTCTCACTCAGTCAAGACACCAAGGCCCTTTCCAAGGTTTCATGTATGACTACATTAGACTAGAAGGTCCACCCCAAAAATGA 2040 44.07 MKQWSWILWFSAMAVLLLFFLHGIDNDHRKAPVIRRLLRKSNSNHSSVMFGVKIVTRPAHVVLDNGIVQVHISTPDGDVTGVSYNGIENLLETKNEDDNRGYWDAVWNKPGQHISTDRIRGSSFRVIVANENQVEISFTKSWSLSEDSTTAPVNVDKRYILMRGRSGFYTYAIFERPEGWPGIEMDQVRIVYKLQSQKFSYMAIADRKQRVMPTLEDRERGRPLDYPEAVLLTNPANTTLKGEVDDKYQYSSEDKDNKVHGWICENPPTGFWMITPSDEFRVAGPLKQDLTSHAGPITLSMFVSTHYSGRDVGMKFAEGEPWKKVFGPVFVYLNSFPRQEDSLSLWENAKQQFVTEENAWPYSFPQSEDFPSSEQRGTVSGRLLVRDMYITRKRLMRASNAFVGLALPGILGSWQRESKGYQFWTEADNHGNFLIKNVRAGVYNLYAFVPGFVGDYKYESIITIHPGCQINLQALVFDPPRQGPTLWEIGVPDRTAAEFYVPDPYPNLVNKLYINNQEKFRQYGLWRRYADLYPHDDLVFTIGIDDYRKDWFYAHVTREIGNGIYEPTTRQIKFSLRAVNQFANYTLQIALASAAECELQVRVNDRNTTRPVFTTGFIGRDNAIARHGIHGLYWFYSINLPGNLLLKGENSIFLTQSRHQGPFQGFMYDYIRLEGPPQK 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36621399 36628878 + evm.model.ptg000004l.631 HCH11g0750 554217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0750 679 CDD RGL4_N 52 335 - -
HCH11g0750 679 SUPERFAMILY Galactose-binding domain-like 483 674 IPR008979 -
HCH11g0750 679 Pfam Polysaccharide lyase family 4, domain II 399 472 IPR029413 -
HCH11g0750 679 CDD RGL4_M 375 475 IPR029413 -
HCH11g0750 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 677 IPR051850 -
HCH11g0750 679 SUPERFAMILY Galactose mutarotase-like 59 337 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
HCH11g0750 679 CDD RGL4_C 487 674 - -
HCH11g0750 679 FunFam Rhamnogalacturonate lyase B 372 472 - -
HCH11g0750 679 Pfam Rhamnogalacturonate lyase family 44 244 IPR010325 -
HCH11g0750 679 Pfam Polysaccharide lyase family 4, domain III 485 673 IPR029411 -
HCH11g0750 679 Gene3D - 50 317 IPR014718 GO:0030246(InterPro)
HCH11g0750 679 SUPERFAMILY Starch-binding domain-like 373 472 IPR013784 GO:0030246(InterPro)
HCH11g0750 679 Gene3D - 372 473 - -
HCH11g0750 679 Gene3D - 483 674 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0750 HCH-Chr11:36621399 HCH12g0710 HCH-Chr12:4422117 3.60E-233 dispersed
HCH11g0750 HCH-Chr11:36621399 HCH14g0431 HCH-Chr14:33339770 6.30E-246 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0750 K18195 - csv:101215252 999.579