Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0766 ATGGCTCCGGCGACTAACTGGTTATCGTTTTCACTTTCTCCTATTGAAATGTTGAGGTCTGCTGAGTCTCAGTTTGTTTCTTATGAGACTCCCTCAGCTGCCTCTCCTCACTATTTCATTGACAACTTCTACTCTAATAATGGATGGAATAATCCAAAATCTCAAGTTTTCTTCATGGATGGAGAGGAAAACGTAGTGAAAGAAAATGAAATTCAAATTCAAACTCAAAACCACCATCTTTCTGATTCATCTTCCATTTTCCCAAGCTTCATTTATCCTCAAACAAATCACCAATCTTCGATTCCAAAGCTGGAAGATTTCCTCGGTGATTCATCGTCCATGGTACGATATTCCGATACCCAAACTGAAACACAAGACTCATCTTTAACTCATATCTACGACCAAACTTCAGCCTATTTCAATGACCAACAGGATCTCAAAGCTTTTGCTGGATTTCAAGCTTTCTCTGCCAACTCCAGCTCTGATGTTGATGATTCAGTCTCAATGGCTAGAACCCAGATCGCTTGCGGCGAGATCCCAGCTACTACTCATTCTATTGAGTCGTCGAGTATCGAGTTGGGTAATTTCTCCGGTTGCCCAACCGGTGCACTTTCTCTAGGTGTCGTGCCGAGCTCGGAGAAGGCCGTCGTTGCGGTCGCTGTTGATTCCGATTGTTCTAAGAAAATTGCTGATACTTTTGGCCAGAGAACTTCAATTTACCGAGGAGTTACTAGGCACAGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGAGGGAGGGTCAGGCTAGGAAAGGACGTCAAGTTTATTTGGGTGGATATGACAAGGAAGAAAAAGCAGCTAAGGCTTATGATTTGGCGGCTTTAAAATACTGGGGTCACACAGCAACCACCAATTTTCCTGTTTCAAATTACACCAAAGAGTTGGAAGAGATGAAGCATGTGACTAAACAAGAGTTCATTGCTTCTCTCAGAAGAAAAAGTAGCGGTTTCTCAAGGGGAGCCTCTATTTATAGAGGTGTCACGAGGCATCATCAACAGGGTCGATGGCAAGCGAGAATTGGCCGTGTTGCTGGGAATAAAGACTTGTACCTTGGGACATTTGCAACTGAAGAGGAGGCGGCTGAGGCATATGATATAGCAGCTATTAAGTTCAGGGGTTTGAATGCTGTGACAAACTTCGAGATGAATCGATATGATGTAGAAGCTATTGCAAATAGTGCGCTGCCCATCGGGGGAGCAGCCAAGAGGCTAAAGCTCTCTCTGGAATCAGAACAGAAACCGCCTCTTACCCTTGATCAACAAGCTGCCCCATGCAGCAGCGGAAGCAACAGCATCAGCTTCGGCGGCACTGCTATCCAAACCGTTGGCTCGAACATTCCTAGTGGAATTCCATACGACCCTGCTATGTTGTATCACCATAATCTTTATCACCACCTTCAACCCAATGGCATCATCAGTTCTTCCGAATCCACCGGTACTGCCAACCTGACCATCGCTCCAGCGCAGATGACGATGACTCCTCAAGCTGCCGAGTTTTTTGTCTGGCCTCACCCTTCATATTGA 1578 45.37 MAPATNWLSFSLSPIEMLRSAESQFVSYETPSAASPHYFIDNFYSNNGWNNPKSQVFFMDGEENVVKENEIQIQTQNHHLSDSSSIFPSFIYPQTNHQSSIPKLEDFLGDSSSMVRYSDTQTETQDSSLTHIYDQTSAYFNDQQDLKAFAGFQAFSANSSSDVDDSVSMARTQIACGEIPATTHSIESSSIELGNFSGCPTGALSLGVVPSSEKAVVAVAVDSDCSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAAKAYDLAALKYWGHTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIANSALPIGGAAKRLKLSLESEQKPPLTLDQQAAPCSSGSNSISFGGTAIQTVGSNIPSGIPYDPAMLYHHNLYHHLQPNGIISSSESTGTANLTIAPAQMTMTPQAAEFFVWPHPSY 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37185694 37190024 - evm.model.ptg000004l.615 HCH11g0766 554233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0766 525 Gene3D AP2/ERF domain 239 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 Gene3D AP2/ERF domain 341 401 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 PRINTS Ethylene responsive element binding protein signature 381 401 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 143 438 - -
HCH11g0766 525 ProSiteProfiles AP2/ERF domain profile. 239 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 SMART rav1_2 239 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 SMART rav1_2 341 405 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 CDD AP2 340 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 ProSiteProfiles AP2/ERF domain profile. 341 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 FunFam AP2-like ethylene-responsive transcription factor 340 401 - -
HCH11g0766 525 CDD AP2 238 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 FunFam AP2-like ethylene-responsive transcription factor ANT 238 307 - -
HCH11g0766 525 SUPERFAMILY DNA-binding domain 340 400 IPR016177 GO:0003677(InterPro)
HCH11g0766 525 Pfam AP2 domain 342 391 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 Pfam AP2 domain 240 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0766 525 SUPERFAMILY DNA-binding domain 238 307 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0766 HCH-Chr11:37185694 HCH2g1390 HCH-Chr2:55674648 1.30E-94 dispersed
HCH11g0766 HCH-Chr11:37185694 HCH8g1037 HCH-Chr8:46330493 8.30E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32585 PF00847 AP2 1.50E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0766 K09285 - vvi:100854470 680.248