Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0766 | ATGGCTCCGGCGACTAACTGGTTATCGTTTTCACTTTCTCCTATTGAAATGTTGAGGTCTGCTGAGTCTCAGTTTGTTTCTTATGAGACTCCCTCAGCTGCCTCTCCTCACTATTTCATTGACAACTTCTACTCTAATAATGGATGGAATAATCCAAAATCTCAAGTTTTCTTCATGGATGGAGAGGAAAACGTAGTGAAAGAAAATGAAATTCAAATTCAAACTCAAAACCACCATCTTTCTGATTCATCTTCCATTTTCCCAAGCTTCATTTATCCTCAAACAAATCACCAATCTTCGATTCCAAAGCTGGAAGATTTCCTCGGTGATTCATCGTCCATGGTACGATATTCCGATACCCAAACTGAAACACAAGACTCATCTTTAACTCATATCTACGACCAAACTTCAGCCTATTTCAATGACCAACAGGATCTCAAAGCTTTTGCTGGATTTCAAGCTTTCTCTGCCAACTCCAGCTCTGATGTTGATGATTCAGTCTCAATGGCTAGAACCCAGATCGCTTGCGGCGAGATCCCAGCTACTACTCATTCTATTGAGTCGTCGAGTATCGAGTTGGGTAATTTCTCCGGTTGCCCAACCGGTGCACTTTCTCTAGGTGTCGTGCCGAGCTCGGAGAAGGCCGTCGTTGCGGTCGCTGTTGATTCCGATTGTTCTAAGAAAATTGCTGATACTTTTGGCCAGAGAACTTCAATTTACCGAGGAGTTACTAGGCACAGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGAGGGAGGGTCAGGCTAGGAAAGGACGTCAAGTTTATTTGGGTGGATATGACAAGGAAGAAAAAGCAGCTAAGGCTTATGATTTGGCGGCTTTAAAATACTGGGGTCACACAGCAACCACCAATTTTCCTGTTTCAAATTACACCAAAGAGTTGGAAGAGATGAAGCATGTGACTAAACAAGAGTTCATTGCTTCTCTCAGAAGAAAAAGTAGCGGTTTCTCAAGGGGAGCCTCTATTTATAGAGGTGTCACGAGGCATCATCAACAGGGTCGATGGCAAGCGAGAATTGGCCGTGTTGCTGGGAATAAAGACTTGTACCTTGGGACATTTGCAACTGAAGAGGAGGCGGCTGAGGCATATGATATAGCAGCTATTAAGTTCAGGGGTTTGAATGCTGTGACAAACTTCGAGATGAATCGATATGATGTAGAAGCTATTGCAAATAGTGCGCTGCCCATCGGGGGAGCAGCCAAGAGGCTAAAGCTCTCTCTGGAATCAGAACAGAAACCGCCTCTTACCCTTGATCAACAAGCTGCCCCATGCAGCAGCGGAAGCAACAGCATCAGCTTCGGCGGCACTGCTATCCAAACCGTTGGCTCGAACATTCCTAGTGGAATTCCATACGACCCTGCTATGTTGTATCACCATAATCTTTATCACCACCTTCAACCCAATGGCATCATCAGTTCTTCCGAATCCACCGGTACTGCCAACCTGACCATCGCTCCAGCGCAGATGACGATGACTCCTCAAGCTGCCGAGTTTTTTGTCTGGCCTCACCCTTCATATTGA | 1578 | 45.37 | MAPATNWLSFSLSPIEMLRSAESQFVSYETPSAASPHYFIDNFYSNNGWNNPKSQVFFMDGEENVVKENEIQIQTQNHHLSDSSSIFPSFIYPQTNHQSSIPKLEDFLGDSSSMVRYSDTQTETQDSSLTHIYDQTSAYFNDQQDLKAFAGFQAFSANSSSDVDDSVSMARTQIACGEIPATTHSIESSSIELGNFSGCPTGALSLGVVPSSEKAVVAVAVDSDCSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAAKAYDLAALKYWGHTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIANSALPIGGAAKRLKLSLESEQKPPLTLDQQAAPCSSGSNSISFGGTAIQTVGSNIPSGIPYDPAMLYHHNLYHHLQPNGIISSSESTGTANLTIAPAQMTMTPQAAEFFVWPHPSY | 525 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 37185694 | 37190024 | - | evm.model.ptg000004l.615 | HCH11g0766 | 554233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0766 | 525 | Gene3D | AP2/ERF domain | 239 | 307 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | Gene3D | AP2/ERF domain | 341 | 401 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | PRINTS | Ethylene responsive element binding protein signature | 381 | 401 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | PRINTS | Ethylene responsive element binding protein signature | 240 | 251 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 143 | 438 | - | - | |
HCH11g0766 | 525 | ProSiteProfiles | AP2/ERF domain profile. | 239 | 305 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | SMART | rav1_2 | 239 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | SMART | rav1_2 | 341 | 405 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | CDD | AP2 | 340 | 399 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | ProSiteProfiles | AP2/ERF domain profile. | 341 | 399 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | FunFam | AP2-like ethylene-responsive transcription factor | 340 | 401 | - | - | |
HCH11g0766 | 525 | CDD | AP2 | 238 | 307 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 238 | 307 | - | - | |
HCH11g0766 | 525 | SUPERFAMILY | DNA-binding domain | 340 | 400 | IPR016177 | GO:0003677(InterPro) | |
HCH11g0766 | 525 | Pfam | AP2 domain | 342 | 391 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | Pfam | AP2 domain | 240 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0766 | 525 | SUPERFAMILY | DNA-binding domain | 238 | 307 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0766 | HCH-Chr11:37185694 | HCH2g1390 | HCH-Chr2:55674648 | 1.30E-94 | dispersed | |
HCH11g0766 | HCH-Chr11:37185694 | HCH8g1037 | HCH-Chr8:46330493 | 8.30E-97 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32585 | PF00847 | AP2 | 1.50E-12 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0766 | K09285 | - | vvi:100854470 | 680.248 |