Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0771 ATGGTTCTGGCTGGTTCTTTGCAACTGTCACATCATCCGGGACCCTGCAGGAACCATTTGCATGAAAAAAATGCTAAGTTTGCCACTGAGAGAAATAGCTTACGGTTTTGGAGTGCAGCCAGTCCATCACCTCTTTTATTTCAACGGAAGAATGTCTGGACCACTCACTTTTTCAGTATGAAAAACTTGCCTAATTACACTGTACCTTTAAGATACCATGTATTTAGGTGCCATTCATCATTGATGCCAGACCCACCATTGGATCCACTTGGGATGAAGGCAGCTTTGGTGACATTGAGAAGGTCTTATGATATATTATGTGGCAGTCCTCCTTTGGTTAACATGGTTCCTGCAATTTGTATTATTATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCGTCATAGTAGAAGCCTACTTTATAGGAGTGATAATAACTGGAAAAGAAGTCGCACATATAAACTTATGACCTCGTATCTTCAACCATTATTGCTATGGACTGGAGCAACACTCATTTGCAGAGCTTTGGATCCAGTTGTTTTACCTACCGAGTCTAGCCAGGTTGTGAAGCAACGAGTATTGAATTTTTTTAGGTCGTTGTCCACTGTGCTGGCCTTTGCCTATTGCTCATCAAGCTTGATCCAACAAGCACAGAAGTTCTTCTCAGAGACTAGTGAATCCAGTGACGCAAGAAATATGGGCTTTCAATTTGCTTGGAAGGCTGTATATTCTGCAGTATGGGTTGCTGCTATCTCGTTGTTCATGGAGTTGCTGGGCTTTTCTACCCAAAAATGGCTTACAGCTGGAGGTCTTGGTACCGTGTTGCTGACACTTGCTGGCCGTGAGATATTCACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAACGAATGGATCCAGACGAGGATTGAGGGCTACGACGTTTCTGGCTCTGTTGAGCATGTAGGATGGTGGTCGCCAACAATAGTAAGAGGTGAAGATCGTGAAGCGGTTCATATACCAAACCATAAGTTTACCATGAACGTTGTTAGGAATCTCAGTCAAAAAACTCATTGGCGGATTAAAACCCACCTAGCCATTAGTCATTTGGATGTCAATAAAATTAATAATATTGTTGCTGACATGCGTAAGGTCTTGGCGAAGAACCCTCAAGTTGAACAACAAAAATTGCATAGAAGAGTATTTTTGGACAATGTTGATCATCAAAATCAGGCACTTTTGATTTTAATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATATCTCTGCGTGAAGGAAGCTATAATATTAGATCTTCTTAGAGTCATTAGTCATCACCGGGCACGACTTGCTACACCAATCCGCACAATGCAGAAGATGTATACTGATTCTGACTTGGACAACGTCCCATTTTCTGATTCAATATTTAGCCGTGGTGGTGTTACTCTAAATCGCCGCTTGCTAATGATTGAACCCCCTTACAAAGTATACGGAGAAGATAAAAAACGAAGCCAGAGTAAGTCATCACGAACCACTGGAGAACAAAACAGTAATCTCACTGCACGATCATCAGGTGACAGCAAGGCAGCCAAAGAGTCACCACCATCTGACAGAAAGACAGAAGTCAGGTCTGGAGAAGGAAGTGATTCTGCTGATACCATAAAGCATCCCAAAGTTGCAACAATGTCTACATCTAATGATAAATTGATTGATGATTTGAAACTTAAATCATCATCAAGACCTGCGTCCAACGCCAATGGCCTCTCTGATACGCCTAGTTCTGATGCCAAAGCAACCAAATCAGAGTCTGATAATTCATTTGATAATCCTGATGCCAAGCAATCCAAGAATAGCTCTGGAAGTAATAAGCAGAACGACAATTCTACGTATCCTGCTGTTTCCTTGCATGAAGACGTTAAGAAATCAAGTGGAAGTTCAGCTGCTTCACAGCCAAAGTCAGAAGGTGAAAAGACACCAGTTATAAAGCCATCAATACCGAAATCTAGTGTTGAAGAGAATATAATTCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACGCTTCCTATTGAGGATGACATGGCTTCATCCCCTCAAACTACGTCAGGGACGAAGGATTTGGCTCCGGCATGCTGGAATGGAAATGGGCCAACCACTCCTAATAAGGATAAGAAACGTCAGACTCCATCTTCTCCTACCACATCTTCTGGTCAATAG 2214 41.92 MVLAGSLQLSHHPGPCRNHLHEKNAKFATERNSLRFWSAASPSPLLFQRKNVWTTHFFSMKNLPNYTVPLRYHVFRCHSSLMPDPPLDPLGMKAALVTLRRSYDILCGSPPLVNMVPAICIIMFAVWGLGPFLRHSRSLLYRSDNNWKRSRTYKLMTSYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFFRSLSTVLAFAYCSSSLIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTRIEGYDVSGSVEHVGWWSPTIVRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLDNVDHQNQALLILISCFVKTSHFEEYLCVKEAIILDLLRVISHHRARLATPIRTMQKMYTDSDLDNVPFSDSIFSRGGVTLNRRLLMIEPPYKVYGEDKKRSQSKSSRTTGEQNSNLTARSSGDSKAAKESPPSDRKTEVRSGEGSDSADTIKHPKVATMSTSNDKLIDDLKLKSSSRPASNANGLSDTPSSDAKATKSESDNSFDNPDAKQSKNSSGSNKQNDNSTYPAVSLHEDVKKSSGSSAASQPKSEGEKTPVIKPSIPKSSVEENIILGVALDGSKRTLPIEDDMASSPQTTSGTKDLAPACWNGNGPTTPNKDKKRQTPSSPTTSSGQ 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37272987 37288598 + evm.model.ptg000004l.610 HCH11g0771 554238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0771 737 MobiDBLite consensus disorder prediction 577 600 - -
HCH11g0771 737 MobiDBLite consensus disorder prediction 639 653 - -
HCH11g0771 737 MobiDBLite consensus disorder prediction 498 737 - -
HCH11g0771 737 MobiDBLite consensus disorder prediction 610 632 - -
HCH11g0771 737 Gene3D - 193 297 - -
HCH11g0771 737 MobiDBLite consensus disorder prediction 692 737 - -
HCH11g0771 737 Gene3D - 298 351 IPR023408 -
HCH11g0771 737 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
HCH11g0771 737 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 723 IPR045042 -
HCH11g0771 737 MobiDBLite consensus disorder prediction 509 530 - -
HCH11g0771 737 Pfam Mechanosensitive ion channel, beta-domain 283 353 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0771 737 MobiDBLite consensus disorder prediction 531 553 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0771 HCH-Chr11:37272987 HCH4g0275 HCH-Chr4:1762551 1.90E-200 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0771 K22047 - csv:101217250 1002.66