Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0771 ATGGTTCTGGCTGGTTCTTTGCAACTGTCACATCATCCGGGACCCTGCAGGAACCATTTGCATGAAAAAAATGCTAAGTTTGCCACTGAGAGAAATAGCTTACGGTTTTGGAGTGCAGCCAGTCCATCACCTCTTTTATTTCAACGGAAGAATGTCTGGACCACTCACTTTTTCAGTATGAAAAACTTGCCTAATTACACTGTACCTTTAAGATACCATGTATTTAGGTGCCATTCATCATTGATGCCAGACCCACCATTGGATCCACTTGGGATGAAGGCAGCTTTGGTGACATTGAGAAGGTCTTATGATATATTATGTGGCAGTCCTCCTTTGGTTAACATGGTTCCTGCAATTTGTATTATTATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCGTCATAGTAGAAGCCTACTTTATAGGAGTGATAATAACTGGAAAAGAAGTCGCACATATAAACTTATGACCTCGTATCTTCAACCATTATTGCTATGGACTGGAGCAACACTCATTTGCAGAGCTTTGGATCCAGTTGTTTTACCTACCGAGTCTAGCCAGGTTGTGAAGCAACGAGTATTGAATTTTTTTAGGTCGTTGTCCACTGTGCTGGCCTTTGCCTATTGCTCATCAAGCTTGATCCAACAAGCACAGAAGTTCTTCTCAGAGACTAGTGAATCCAGTGACGCAAGAAATATGGGCTTTCAATTTGCTTGGAAGGCTGTATATTCTGCAGTATGGGTTGCTGCTATCTCGTTGTTCATGGAGTTGCTGGGCTTTTCTACCCAAAAATGGCTTACAGCTGGAGGTCTTGGTACCGTGTTGCTGACACTTGCTGGCCGTGAGATATTCACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAACGAATGGATCCAGACGAGGATTGAGGGCTACGACGTTTCTGGCTCTGTTGAGCATGTAGGATGGTGGTCGCCAACAATAGTAAGAGGTGAAGATCGTGAAGCGGTTCATATACCAAACCATAAGTTTACCATGAACGTTGTTAGGAATCTCAGTCAAAAAACTCATTGGCGGATTAAAACCCACCTAGCCATTAGTCATTTGGATGTCAATAAAATTAATAATATTGTTGCTGACATGCGTAAGGTCTTGGCGAAGAACCCTCAAGTTGAACAACAAAAATTGCATAGAAGAGTATTTTTGGACAATGTTGATCATCAAAATCAGGCACTTTTGATTTTAATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATATCTCTGCGTGAAGGAAGCTATAATATTAGATCTTCTTAGAGTCATTAGTCATCACCGGGCACGACTTGCTACACCAATCCGCACAATGCAGAAGATGTATACTGATTCTGACTTGGACAACGTCCCATTTTCTGATTCAATATTTAGCCGTGGTGGTGTTACTCTAAATCGCCGCTTGCTAATGATTGAACCCCCTTACAAAGTATACGGAGAAGATAAAAAACGAAGCCAGAGTAAGTCATCACGAACCACTGGAGAACAAAACAGTAATCTCACTGCACGATCATCAGGTGACAGCAAGGCAGCCAAAGAGTCACCACCATCTGACAGAAAGACAGAAGTCAGGTCTGGAGAAGGAAGTGATTCTGCTGATACCATAAAGCATCCCAAAGTTGCAACAATGTCTACATCTAATGATAAATTGATTGATGATTTGAAACTTAAATCATCATCAAGACCTGCGTCCAACGCCAATGGCCTCTCTGATACGCCTAGTTCTGATGCCAAAGCAACCAAATCAGAGTCTGATAATTCATTTGATAATCCTGATGCCAAGCAATCCAAGAATAGCTCTGGAAGTAATAAGCAGAACGACAATTCTACGTATCCTGCTGTTTCCTTGCATGAAGACGTTAAGAAATCAAGTGGAAGTTCAGCTGCTTCACAGCCAAAGTCAGAAGGTGAAAAGACACCAGTTATAAAGCCATCAATACCGAAATCTAGTGTTGAAGAGAATATAATTCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACGCTTCCTATTGAGGATGACATGGCTTCATCCCCTCAAACTACGTCAGGGACGAAGGATTTGGCTCCGGCATGCTGGAATGGAAATGGGCCAACCACTCCTAATAAGGATAAGAAACGTCAGACTCCATCTTCTCCTACCACATCTTCTGGTCAATAG 2214 41.92 MVLAGSLQLSHHPGPCRNHLHEKNAKFATERNSLRFWSAASPSPLLFQRKNVWTTHFFSMKNLPNYTVPLRYHVFRCHSSLMPDPPLDPLGMKAALVTLRRSYDILCGSPPLVNMVPAICIIMFAVWGLGPFLRHSRSLLYRSDNNWKRSRTYKLMTSYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFFRSLSTVLAFAYCSSSLIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTRIEGYDVSGSVEHVGWWSPTIVRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLDNVDHQNQALLILISCFVKTSHFEEYLCVKEAIILDLLRVISHHRARLATPIRTMQKMYTDSDLDNVPFSDSIFSRGGVTLNRRLLMIEPPYKVYGEDKKRSQSKSSRTTGEQNSNLTARSSGDSKAAKESPPSDRKTEVRSGEGSDSADTIKHPKVATMSTSNDKLIDDLKLKSSSRPASNANGLSDTPSSDAKATKSESDNSFDNPDAKQSKNSSGSNKQNDNSTYPAVSLHEDVKKSSGSSAASQPKSEGEKTPVIKPSIPKSSVEENIILGVALDGSKRTLPIEDDMASSPQTTSGTKDLAPACWNGNGPTTPNKDKKRQTPSSPTTSSGQ 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37272987 37288598 + evm.model.ptg000004l.610 HCH11g0771 554238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0771 737 MobiDBLite consensus disorder prediction 577 600 - -
HCH11g0771 737 MobiDBLite consensus disorder prediction 639 653 - -
HCH11g0771 737 MobiDBLite consensus disorder prediction 498 737 - -
HCH11g0771 737 MobiDBLite consensus disorder prediction 610 632 - -
HCH11g0771 737 Gene3D - 193 297 - -
HCH11g0771 737 MobiDBLite consensus disorder prediction 692 737 - -
HCH11g0771 737 Gene3D - 298 351 IPR023408 -
HCH11g0771 737 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
HCH11g0771 737 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 723 IPR045042 -
HCH11g0771 737 MobiDBLite consensus disorder prediction 509 530 - -
HCH11g0771 737 Pfam Mechanosensitive ion channel, beta-domain 283 353 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0771 737 MobiDBLite consensus disorder prediction 531 553 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0771 K22047 - - csv:101217250 1002.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0771 HCH-Chr11:37272987 HCH4g0275 HCH-Chr4:1762551 1.90E-200 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1640 . 69 534 Mechanosensitive Ion Channel Family AT4G00290 60.7 1.8e-154 542.7
HCH11g0771 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 55.7 7.4e-199 690.6
HCH4g0275 . 31 692 Mechanosensitive Ion Channel Family AT5G10490 57.5 3.2e-194 675.2
HCH4g0275 . 8 688 Mechanosensitive Ion Channel Family AT1G58200 57.7 7.7e-204 707.2
HCH11g0771 . 49 696 Mechanosensitive Ion Channel Family AT1G58200 51.6 3.0e-171 599.0
HCH2g0582 . 44 911 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.9e-256 881.3
HCH7g0440 . 73 847 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.3e-239 825.1
HCH2g0582 . 44 906 Mechanosensitive Ion Channel Family AT3G14810 54.9 7.1e-247 850.5
HCH7g0440 . 57 846 Mechanosensitive Ion Channel Family AT3G14810 53.9 5.6e-228 787.7
HCH2g0582 . 50 911 Mechanosensitive Ion Channel Family AT1G78610 58.5 7.1e-279 956.8
HCH7g0440 . 78 847 Mechanosensitive Ion Channel Family AT1G78610 60.1 7.4e-260 893.6
HCH7g0440 . 53 851 Mechanosensitive Ion Channel Family AT2G17000 55.1 7.5e-233 803.9
HCH2g0582 . 209 907 Mechanosensitive Ion Channel Family AT2G17000 60.0 9.2e-231 797.0
HCH2g0582 . 1 648 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.1e-161 566.2
HCH12g0472 . 57 727 Mechanosensitive Ion Channel Family AT5G19520 56.2 8.5e-204 707.2
HCH12g0472 . 48 727 Mechanosensitive Ion Channel Family AT5G12080 60.0 5.8e-221 764.2
HCH8g0615 . 33 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.7e-201 697.2
HCH6g1377 . 102 673 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.8e-151 532.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71