Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0791 ATGGAGGGAATGCCGCACCCAATTCCTCGAACAGTGGAAGAAGTCTTTAGCGACTTCAAAGGCAGACGCGCTGGCTTGATCAAAGCCCTCACCGCTGATGTTCAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACCTGTGTCTTTATGGACTTCCAAATGAGACGTGGGAAGTAAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCCGAACCAGCATTAGGTATAAATTTTGCTAGGGATGGTATGCAGGAGAAAGATTGGTTATCACTGGTTGCAGTTCACAGTGACTCGTGGTTACTTGCTGTTGCATTCTATTTTGGTGCACGCTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCGAGTGTATTTGAAGTTGTGAGTGGAAATTCTAAGCAATCAAAAGAACAGTCTGCTACTCATAACAATAGCAGCAAAAGCAAGTCAACTGGGAAGATGTCCCGGCAATTGGAGTCTCATAGCAAGGGAGTGAAAATGTCTCCGCCGCCAAAAGAGGAGGATGATAGCGGGGAAGAAGAGGAAGAAGAGGAAGACGATGAACAGGGTGCCACATGTGGGGCCTGTGGGGATAACTATGGCAATGATGAGTTCTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCACGGAAAATGCGTGAAGATTACACCTGCGAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 768 47.27 MEGMPHPIPRTVEEVFSDFKGRRAGLIKALTADVQKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNSKQSKEQSATHNNSSKSKSTGKMSRQLESHSKGVKMSPPPKEEDDSGEEEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38197646 38203924 + evm.model.ptg000004l.590 HCH11g0791 554258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0791 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
HCH11g0791 255 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
HCH11g0791 255 SMART PHD_3 201 249 IPR001965 -
HCH11g0791 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
HCH11g0791 255 CDD PHD_AL_plant 202 251 IPR044104 -
HCH11g0791 255 FunFam PHD finger alfin-like protein 194 250 - -
HCH11g0791 255 Pfam PHD-finger 202 248 IPR019787 -
HCH11g0791 255 MobiDBLite consensus disorder prediction 183 200 - -
HCH11g0791 255 MobiDBLite consensus disorder prediction 138 201 - -
HCH11g0791 255 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
HCH11g0791 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
HCH11g0791 255 MobiDBLite consensus disorder prediction 163 182 - -
HCH11g0791 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
HCH11g0791 255 MobiDBLite consensus disorder prediction 138 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0791 HCH-Chr11:38197646 HCH4g0514 HCH-Chr4:3390936 2.00E-96 dispersed
HCH11g0791 HCH-Chr11:38197646 HCH10g0555 HCH-Chr10:4467845 5.10E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32588 PF12165 Alfin 1.00E-68 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0791 K26274 - csv:101212601 481.87