Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH11g0802 | ATGGATGGGAGGAGAGAGAATGATATAGAAATCGAGAAGCGTGAGAGGCCGGAATTGAGATTTTCCGATGACGGAGATTCGGTGGCGGTGAGTCTCGGCGAGCCGCTTTTGCGTACTAGTGTTAACAGAATCAGCACCACCTCTCAGCTTGCTATTGTTGGTTCTAATGTCTGTCCAATCGAAAGTCTCGATTATGAGATTATTGAGAATGATCTTTTCAAGCAAGACTGGAGGTCAAGAAAAAAGGTTGAGATATTTCAGTATATTATCCTCAAATGGACACTATGTCTCCTTATTGGTTTAACTACAGGGCTTGTTGGCTTCTTCAACAACATTGCTGTTGAGAATATTGCTGGTTTCAAACTTCTGCTTACCAACAATCTCATGCTCAAGCAAAAGTACTATCAGGCATTTGCAGCATATGTTGGTTGCAATATCGTTTTAGCTGTTGCTGCTGCCGCGCTTTGTGCCTACATTGCTCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCTTACCTCAATGGGGTAGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTAAAGATTTTCGGTTCTATATTTGCTGTTGCTGGTGGATTTGTTGTTGGTAAGGAAGGACCCATGGTTCACACTGGTTCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATCACCTGTGGTGCAGGAGCTGGTGTAGCGGCTGCTTTCCGTGCTCCGGTGGGTGGTGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTAGCAGTTGTCTTGAGGGGTTTCATGGGATTGTGCCGAGATGGAAAATGTGGATTATTTGGTGAAGGAGGTCTCATCATGTTTGACATCCACACAGAAAACTCTACTTATGGCACCCCAGATCTTTTGGCAATTATTTTACTTGGAGTTATTGGTGGTGTGTTTGGAAGTCTTTACAACTTTCTTGTGGATAAGGTCCTTCGAACCTACACAATCATAAATGAGAGAGGTCCTGGATTTAAAGTTATGCTTGTTGTCAGTGTTTCCCTATTGACAACTTGTGTCTCATTTGGTCTTCCTTGGTTTTCACGATGTTTACCTTGCCCACCTGACTTAGAGGATCAGTGCCCGCCCGTTGGTCACTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCTTCTCTATTTTTCACTACCAATGATAATGCTATTCGGAACCTGTTCACATCTGCTACTGACAGGCAATTTCAGCTCTCCTCTCTTTTTATTTTCTTTGTTGCTGTATATTGCCTTGGCATTATTACTTATGGCATTGCTGTCCCCTCCGGCCTCTTCATTCCTGTAATACTGGCTGGGGCCTCTTATGGGCGCATTGTAGGAAGACTATTTGGTTCGCTTGCTAATCTCGATGTGTCTCTCTATGCCCTTCTTGGAGCTGCATCCTTTCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTTACTAACAACCTTTTGATGCTCCCATTGCTAATGCTGGTTCTTCTTATTTCAAAGTCAGTGGCAGATTGTTTTAATAAAGGTGTCTATGATCAGATTGTGAAAATGAAGGGACTCCCTTTTTTGGAAGCCCATGCAGAACCATATATGAAGCAATTGGTCGCTGGTCGTGTTGCTTCTGGTCCATTAATTACATTCTCCGGAGTTGAAAAGGTCGGAGACATAATGCATGCTTTGAAACTAACAAATCACAATGGGTTCCCTGTAATTGATGCGCCTCCTTTCTCGGATGCTTCAGAGCTTTGTGGGCTTGTACTTAGGTCTCATCTGCTTGTGTTGCTTAAAGGAAAAAGTTTTACAAAGCAAAGGGCGTTAATTAGATCAGAAATTATGAGAAATTTCAAAGCATGTGATTTTGCAAAATCAGGTTCTGGCAAGGGGGTCAGGCTGGAGGATTTGGACATCAATGAGGAGGAGATGGAGATGTTTGTTGATCTTCATCCGATTACAAATACGTCACCCTATACAGTAGTAGAAACAATGTCTTTAGCTAAAGCCGCAATTCTCTTTCACGCGCTTGGCTTGAGGCACTTGTTGGTAGTGCCAAAAACACAAGAGAGGCCTCCGATCGTCGGAATTCTCACACGACATGACTTTATGCCAGAACACGTCTTGGGACTTTACCCTCATCTCAATCCCGACAAGTAG | 2328 | 43.77 | MDGRRENDIEIEKRERPELRFSDDGDSVAVSLGEPLLRTSVNRISTTSQLAIVGSNVCPIESLDYEIIENDLFKQDWRSRKKVEIFQYIILKWTLCLLIGLTTGLVGFFNNIAVENIAGFKLLLTNNLMLKQKYYQAFAAYVGCNIVLAVAAAALCAYIAPAAAGSGIPEVKAYLNGVDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGSCIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMGLCRDGKCGLFGEGGLIMFDIHTENSTYGTPDLLAIILLGVIGGVFGSLYNFLVDKVLRTYTIINERGPGFKVMLVVSVSLLTTCVSFGLPWFSRCLPCPPDLEDQCPPVGHSGNYKNFQCPPGHYNDLASLFFTTNDNAIRNLFTSATDRQFQLSSLFIFFVAVYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSLANLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADCFNKGVYDQIVKMKGLPFLEAHAEPYMKQLVAGRVASGPLITFSGVEKVGDIMHALKLTNHNGFPVIDAPPFSDASELCGLVLRSHLLVLLKGKSFTKQRALIRSEIMRNFKACDFAKSGSGKGVRLEDLDINEEEMEMFVDLHPITNTSPYTVVETMSLAKAAILFHALGLRHLLVVPKTQERPPIVGILTRHDFMPEHVLGLYPHLNPDK | 775 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 38434645 | 38440829 | - | evm.model.ptg000004l.579 | HCH11g0802 | 554269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH11g0802 | 775 | PRINTS | Chloride channel signature | 531 | 550 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Chloride channel signature | 481 | 501 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Chloride channel signature | 569 | 583 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Chloride channel signature | 161 | 178 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Chloride channel signature | 192 | 211 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Chloride channel signature | 256 | 275 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Chloride channel signature | 513 | 529 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH11g0802 | 775 | FunFam | Chloride channel ClC3 | 84 | 399 | - | - | |
| HCH11g0802 | 775 | Pfam | CBS domain | 710 | 760 | IPR000644 | - | |
| HCH11g0802 | 775 | SUPERFAMILY | CBS-domain pair | 586 | 760 | IPR046342 | - | |
| HCH11g0802 | 775 | Gene3D | Clc chloride channel | 84 | 582 | - | - | |
| HCH11g0802 | 775 | Pfam | Voltage gated chloride channel | 149 | 562 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Plant CLC chloride channel signature | 277 | 285 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Plant CLC chloride channel signature | 291 | 301 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Plant CLC chloride channel signature | 433 | 449 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Plant CLC chloride channel signature | 66 | 74 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH11g0802 | 775 | PRINTS | Plant CLC chloride channel signature | 309 | 316 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH11g0802 | 775 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 585 | 762 | - | - | |
| HCH11g0802 | 775 | SMART | cbs_1 | 602 | 655 | IPR000644 | - | |
| HCH11g0802 | 775 | SMART | cbs_1 | 713 | 764 | IPR000644 | - | |
| HCH11g0802 | 775 | CDD | ClC_6_like | 61 | 582 | - | - | |
| HCH11g0802 | 775 | ProSiteProfiles | CBS domain profile. | 709 | 775 | IPR000644 | - | |
| HCH11g0802 | 775 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 45 | 763 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| HCH11g0802 | 775 | SUPERFAMILY | Clc chloride channel | 70 | 585 | IPR014743 | - | |
| HCH11g0802 | 775 | Gene3D | - | 583 | 761 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0387 | HCH-Chr10:3092639 | HCH11g0802 | HCH-Chr11:38434645 | 1.80E-257 | dispersed | |
| HCH10g0530 | HCH-Chr10:4264652 | HCH11g0802 | HCH-Chr11:38434645 | 2.30E-21 | dispersed | |
| HCH11g0802 | HCH-Chr11:38434645 | HCH13g0934 | HCH-Chr13:12356876 | 6.50E-231 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH11g0802 | K05016 | - | csv:101209987 | 1237.25 |