Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0809 ATGGCTTTGGTTTTGCACTCTTGGAAGTCTAACAAAAATGCTTTCAAGGCTCTCATAGCTGCCGAATACAATGGTGTCAAAGTTGACATTCCTGAAGATTTTACAATGGGCGTGTCCAATAAAACACCTGAGTTTATCAAGATGAATCCAATTGGAAAGGTTCCTGTGCTGGAAACGCCCGATGGTGCTGTCTTCGAGAGCAATGCTATAGCTCGCTATGTTACTCGCTTGAAGGACAATGGTTTATATGGCTCTTCTTTGATTGATTATGCTCATATTGAACAGTGGATTGATTTCGCCTCATTGGAAATTGATGTTCAACTTGGGAACATAATTTATCCTAGATTGGGATATCGTGCTTACCTTCCTCCTGTCGAGGAAGCTTCAATCTCTGCATTAAAAAGAGCTCTCGTTGCTTTGAACACCCATCTTGCTTCAAACACTTACCTTGTTGGGCATTCTGTGACACTTGCTGACATTGTTTTGACAAGTAACCTGTATTTGGGATTTACTGTGTACTTGACAAAAAGCTTTACCTCTGAGTTCCCTCATGTTGAGAGGTACTTCTGGACATTGGTCAATCAGCCAAATTTTAAAAAGATAATTGGTGAGGTGAAGCAGGCAGAATCTATTCCACCAGTTCAGTCTTTGAAAAAACCCCAGCCTCAAGAGGCTGCCAAACCAAAACCGAAGGATGAGCCCAAAAAAAAGGAAGAGAAGCCTAAAGTAGAAGCGGGCGGGGAAGAGGAGGCACCAAAGCCTAAGGCTAAGAACCCTCTTGACCTGCTTCCTCCTAGTAAGATGATTTTGGATGACTGGAAACGTCTCTATTCTAACACCAAGACTAACTTCCGTGAGGTTGCTATTAAAGGATTTTGGGACATGTATGATCCAGAAGGGTACTCCCTTTGGTTCTGTGACTACAAGTACAACGAGGAGAATACAGTTTCGTTTGTGACACTGAACAAGGTTGGTGGATTTCTGCAGAGAATGGATCTGGCCCGTAAATATGCTTTCGGAAAGATGCTAGTAATTGGATCAGAGGCACCATTTAAAGTGAAGGGACTATGGCTGTTCCGTGGACAAGAGATCCCGAAATTCGTAATGGACGAGTGCTACGATATGGAACTTTACGAGTGGACAAAGGTCGACATCTCTGATGAAGCCCAGAAGGAGAGGGTGAGCCAGATGATTGAAGACCAAGAACCATTCGAGGGAGAAGCTCTTTTGGATGCCAAATGCTTCAAGTGA 1251 43.33 MALVLHSWKSNKNAFKALIAAEYNGVKVDIPEDFTMGVSNKTPEFIKMNPIGKVPVLETPDGAVFESNAIARYVTRLKDNGLYGSSLIDYAHIEQWIDFASLEIDVQLGNIIYPRLGYRAYLPPVEEASISALKRALVALNTHLASNTYLVGHSVTLADIVLTSNLYLGFTVYLTKSFTSEFPHVERYFWTLVNQPNFKKIIGEVKQAESIPPVQSLKKPQPQEAAKPKPKDEPKKKEEKPKVEAGGEEEAPKPKAKNPLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNEENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPKFVMDECYDMELYEWTKVDISDEAQKERVSQMIEDQEPFEGEALLDAKCFK 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38510625 38513391 + evm.model.ptg000004l.572 HCH11g0809 554276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0809 416 Pfam Glutathione S-transferase, C-terminal domain 127 196 IPR004046 -
HCH11g0809 416 SFLD Glutathione Transferase (cytosolic) 3 189 IPR040079 -
HCH11g0809 416 CDD GST_N_EF1Bgamma 3 77 - -
HCH11g0809 416 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 256 416 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH11g0809 416 SUPERFAMILY eEF1-gamma domain 257 416 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH11g0809 416 Gene3D - 79 214 - -
HCH11g0809 416 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 256 416 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH11g0809 416 FunFam Elongation factor 1B gamma 1 74 - -
HCH11g0809 416 SUPERFAMILY Thioredoxin-like 2 79 IPR036249 -
HCH11g0809 416 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
HCH11g0809 416 MobiDBLite consensus disorder prediction 212 263 - -
HCH11g0809 416 MobiDBLite consensus disorder prediction 224 256 - -
HCH11g0809 416 FunFam Elongation factor 1 gamma 79 215 - -
HCH11g0809 416 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
HCH11g0809 416 FunFam Elongation factor 1-gamma 1 256 416 - -
HCH11g0809 416 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
HCH11g0809 416 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 416 IPR044628 GO:0004364(InterPro)
HCH11g0809 416 SUPERFAMILY GST C-terminal domain-like 73 213 IPR036282 -
HCH11g0809 416 SMART EF1G_2 255 363 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH11g0809 416 Pfam Elongation factor 1 gamma, conserved domain 255 363 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH11g0809 416 SFLD Main (cytGST) 3 189 - -
HCH11g0809 416 CDD GST_C_EF1Bgamma_like 89 209 - -
HCH11g0809 416 Gene3D Glutaredoxin 1 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0809 HCH-Chr11:38510625 HCH12g1554 HCH-Chr12:42179859 4.80E-188 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0809 K03233 - vvi:100246571 660.603