Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0820 ATGTTGTTTTGCCTTGTCCTTGCACTGTTTTCTCTTCTAGACACTTCATGTTCCCACAGTTTGGTTAGTGATTTCCATGTCCTACTTGAACTAAAACAAGGATTTCAGTTCCCTGACTCTGCTGCAATAGGTACGTGGAGCGCTTCGAATTTCGGCTCGGTTTGTTCGTGGGACGGGATTCGATGCTCCGACAGACGAGTTGTTTCGGTGGACTTGACGGATTTGAACCTCGGTGGCTATGTGTTACCACTGATTTCAAGACTTGATCAGCTTTCTGAGTTGTCTGTTGCAGGAAATAATATGTCTGGTGGCATTGAGGTTGAGAATTTGAGTTACCTTCGATTCCTTAACATCTCAAACAATCAGTTCAGTGGGGCTCTGGATTGGAACTTTTTGAATCTCGCAAACTTGGAAGTGTTTGATGCATATAACAACAATTTCTCTGGTCTGCTTCCCACTGGGATTTTGAACTTGAAGAACCTCAAATACCTGGACTTGGGAGGTAATTTTTTCTATGGAAAGATCCCAGGAAGCTATGGGAATTTAGAAGGGTTGCAATATCTTTCTCTTGCAGGAAATGATTTAGAGGGGAAAATCCCAGGTGAGTTGGGAAATCTGACAAACTTGAGAGAGATTTACTTAGGCCATTACAATGTTTTCGAAGGCGGGATTCCGGCCGAGCTTGGGAGTTTGATCAATTTGGTTATCATGGAAATTGCTGACTGTGGATTGGAGGGCTCAATTCCTCTTGAACTGGGGAATTTGAAGTCTTTGAACACTCTCCATTTGCATGCGAATCGATTCTCGAGTTCGGTCCCGACGCAGTTAGGCAACTTGACAAACTTGGTCTCTCTAGACCTCTCCAACAATGCACTCACAGGAGAAATCCCATCTGAATTTGTTAATCTCAAACAGCTCAAGCTGTTCAACCTCTTCATGAACAAACTACATGGTTCTATTCCAGACTATGTAGCAGATTTGCCAAACTTGGAGGCTCTTGGGCTATGGATGAACAACTTCACCGGCACAATACCTAAGAATCTTGGCCAAAATGGGAAGCTGCAGCTAATCGACTTGTCTACGAACAAGCTCACCGGGACAATTCCACAGGATTTGTGTTCATCAAACCAGCTCAAAATACTAATTCTGATGAACAACTTCCTCTTTGGGCCAATCCCTGATGGCTTGGGGACATGTATCAGTCTTACGAAAGTGCGATTCGGGCAGAACTATTTGAATGGTAGCATCCCAAATGGCTTCATTTACCTGCCTCAGTTGAATTTAGCAGAGTTTCAAGACAATTACTTATCAGGTGCACTGTCAGAGAATTGGGATTCTTCATCAAAACCTATCAAGTTAGGACAGCTAAATCTTTCTAACAATCTTCTATCAGGGCCTTTACCATTCTCACTTTCTAATTTCTCTTCATTGCAAATTCTTCTCCTCAGTGGAAACCAATTTTCGGGTTCGATCCCTCCTTCGATCGGAGAACTTACTCAACTACTAAAGCTTGATCTTAGTAGAAACTCGCTTTCAAGTCAAATCCCACCTGAAATTGGCAATTGTGTCCATCTCACTTATCTTGATATGAGCAAGAACAATCTCTCTGGCCCAATCCCACCTGAAATATCCAATGCTCATATCCTCAATTACCTCAACTTATCAAGAAACCATCTGAATCAATCCCTTCCCAAGTCAATCGGTACGATGAAAAGCCTCACCATTGCCGATTTCTCCTTCAACGATTTCTCCGGAAAGCTACCTGAATCCGGACAACTCACCTTCTTCAATGCTTCATCCTTTGCTGGAAACCCCCAACTCTGTGGTTCCCTCCTCAACAACCCTTGCAATTTCGCTACAACGACAACCAAACCGGGCAAAACTCCTGCGTTCTTCAAGCTAATCTTTGCCCTCGGCCTACTAATTTGCTCATTAATCTTCGCCACCGCCGCTGTAGTCAAAGCTAAATCCTTCAAACGAAAAGGCGCTGGCTCATGGAAAATGACATCGTTCCAAAAGCTTGATTTCACCGTCTATGACATCCTCGAATGCGTGAAAGACGGTAACATCATCGGAAGAGGAGGAGCTGGTATCGTCTACCACGGCAAAATGCCGAACGGAGTCGAAATAGCAGTTAAAAAACTCCTTGGGTTCGGCCCTAACAGCCACGACCACGGCTTCCGAGCCGAAATCCAAACACTGGGCAACATCCGGCACCGTAACATCGTTAGATTACTAGCATTCTGCACCAACAAAGAAACAAATCTCCTAGTGTATGAATTCATGAGAAATGGAAGCTTAGGTGAGGCATTACATGGCAAAAAAGGATCATTTTTGGGATGGAATTTGAGATACAAAATTGCCATAGAAGCTGCTAAAGGTCTATGTTACCTTCATCATGACTGTTCTCCATTGATCGTTCACCGAGACGTGAAATCTAATAACATCCTATTGGATTCGAGCTTCGAAGCTCATGTCGCCGATTTCGGCCTCGCAAAGTTCATGTTCGACGGCGGCGCATCGGAATGTATGTCTGTCATTGCCGGATCCTATGGTTACATTGCTCCTGAATATGCATACACATTAAGAGTCGACGAGAAAAGCGATGTGTATAGCTTTGGAGTCGTGTTGCTGGAGCTTCTCACGGGGCGTCGTCCGATTGGAGATTTTGGGGATGGAGTCGTTGACATAGCGCAATGGTGCAAGAAAACTATTATGAGTGGCGACAAAGAAGGCGAGATTACATGCATCGTCGACAAACGGGTCGGGATGGTGCCGAAAGAGGAAGCAAAACACTTATTTTTCATAGCAATGCTATGTGTTCAAGAGAATAGTGTAGAGAGGCCAACAATGAGAGAAGTGGTTCAAATGCTGGCTGAGTTTCCTCACCATTCTCCAAGTTGTCACCAATCTTCCTCCTCTTCTTCTCCCCTTGCTTGTCAAAATTTGAAGAATAATGGTGAAAAGGAGAGAGAGGTGACTAAGTTCAAACAAGATATTTTGGTTTAA 3009 43.93 MLFCLVLALFSLLDTSCSHSLVSDFHVLLELKQGFQFPDSAAIGTWSASNFGSVCSWDGIRCSDRRVVSVDLTDLNLGGYVLPLISRLDQLSELSVAGNNMSGGIEVENLSYLRFLNISNNQFSGALDWNFLNLANLEVFDAYNNNFSGLLPTGILNLKNLKYLDLGGNFFYGKIPGSYGNLEGLQYLSLAGNDLEGKIPGELGNLTNLREIYLGHYNVFEGGIPAELGSLINLVIMEIADCGLEGSIPLELGNLKSLNTLHLHANRFSSSVPTQLGNLTNLVSLDLSNNALTGEIPSEFVNLKQLKLFNLFMNKLHGSIPDYVADLPNLEALGLWMNNFTGTIPKNLGQNGKLQLIDLSTNKLTGTIPQDLCSSNQLKILILMNNFLFGPIPDGLGTCISLTKVRFGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGALSENWDSSSKPIKLGQLNLSNNLLSGPLPFSLSNFSSLQILLLSGNQFSGSIPPSIGELTQLLKLDLSRNSLSSQIPPEIGNCVHLTYLDMSKNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGTMKSLTIADFSFNDFSGKLPESGQLTFFNASSFAGNPQLCGSLLNNPCNFATTTTKPGKTPAFFKLIFALGLLICSLIFATAAVVKAKSFKRKGAGSWKMTSFQKLDFTVYDILECVKDGNIIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCTNKETNLLVYEFMRNGSLGEALHGKKGSFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPIGDFGDGVVDIAQWCKKTIMSGDKEGEITCIVDKRVGMVPKEEAKHLFFIAMLCVQENSVERPTMREVVQMLAEFPHHSPSCHQSSSSSSPLACQNLKNNGEKEREVTKFKQDILV 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38634970 38639943 + evm.model.ptg000004l.561 HCH11g0820 554287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0820 1002 ProSiteProfiles Protein kinase domain profile. 685 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0820 1002 SUPERFAMILY RNI-like 69 389 - -
HCH11g0820 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0820 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 620 - -
HCH11g0820 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 131 218 - -
HCH11g0820 1002 SUPERFAMILY L domain-like 352 609 - -
HCH11g0820 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 762 975 - -
HCH11g0820 1002 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 960 IPR050647 -
HCH11g0820 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 219 324 - -
HCH11g0820 1002 SUPERFAMILY Protein kinase-like (PK-like) 676 958 IPR011009 -
HCH11g0820 1002 Gene3D Ribonuclease Inhibitor 22 175 IPR032675 -
HCH11g0820 1002 Gene3D Ribonuclease Inhibitor 272 373 IPR032675 -
HCH11g0820 1002 Pfam Leucine Rich Repeat 136 158 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine Rich Repeat 549 569 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 Pfam Leucine rich repeat 257 316 IPR001611 GO:0005515(InterPro)
HCH11g0820 1002 SMART LRR_typ_2 498 522 IPR003591 -
HCH11g0820 1002 SMART LRR_typ_2 255 278 IPR003591 -
HCH11g0820 1002 SMART LRR_typ_2 279 302 IPR003591 -
HCH11g0820 1002 SMART LRR_typ_2 134 157 IPR003591 -
HCH11g0820 1002 SMART LRR_typ_2 182 206 IPR003591 -
HCH11g0820 1002 SMART LRR_typ_2 474 496 IPR003591 -
HCH11g0820 1002 SMART LRR_typ_2 327 351 IPR003591 -
HCH11g0820 1002 Gene3D Ribonuclease Inhibitor 374 490 IPR032675 -
HCH11g0820 1002 Gene3D Ribonuclease Inhibitor 491 618 IPR032675 -
HCH11g0820 1002 Gene3D Ribonuclease Inhibitor 176 271 IPR032675 -
HCH11g0820 1002 PRINTS Leucine-rich repeat signature 282 295 - -
HCH11g0820 1002 PRINTS Leucine-rich repeat signature 498 511 - -
HCH11g0820 1002 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
HCH11g0820 1002 SMART serkin_6 685 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0820 1002 Gene3D Transferase(Phosphotransferase) domain 1 762 981 - -
HCH11g0820 1002 Pfam Protein kinase domain 687 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0820 1002 Gene3D Phosphorylase Kinase; domain 1 649 761 - -
HCH11g0820 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 761 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0820 HCH-Chr11:38634970 HCH14g1204 HCH-Chr14:38644274 1.60E-144 dispersed
HCH11g0820 HCH-Chr11:38634970 HCH14g0409 HCH-Chr14:33102975 3.90E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81068 PF07714 PK_Tyr_Ser-Thr 1.30E-42 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0820 - - - 0.0