Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0834 ATGGAAGATAACAAGTTATTTTACGTATTTGGTTGGAACCCGTTTTTGTTTTTGAGTCAAAGATCTACGTTTATCTTTGTTTTGATATTCTACTCTCTCTTCTCCTCATTCTTACCTTCCTATGGATATGATTCATTGGACCCTTATGCCAACATTACTATCACTTGGGATTTCTTGCTGGAAAATAGTGATACTTATGATGTGAAGGTATCAATACACAACTTCCAACTGTTTCGCCACGTGGAACTTCCGGGTTGGAAGTTGGGTTGGTCATGGAAGGGTGATGAAGTTATATGGGGGATGTTAGGAGCAGAGGCAACTGAGCAAGGGAATTGCTCCAAATACATAGGCAGGGAGCTTCCACATTGTTGTGAGAAAAGGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAACTTCAAGTTGCCAATTGTTGTAAAGGAGGTGTACTTTCTTCCATGACTCAAGACCTTTCCAATAATGGAGCTGCCTTCCAAATGAATGTTGGAAAATCTTCTGATAACAAAATGCCTGCAAATTTCACTCTTGGACTTCCTGGTTATTCTTGTGGTGACCCTTTTCAAGTCTCTCCAACCAAGATCAGTAAGGACGGCGGTCGTCGGTGGACACAAGTTCTAGAGACATGGAACGTGACCTGCGTTTACTCCCAATTTCGAGCATCATCGGCACCAAGTTGCTGCGTTTCATTATCTTCCTTCTACAACAGCACCATTGTTCCCTGCCCTCAATGCAGCTGTGGTTGCCAAGGCCTAGAGGGAACGAAATGCGTCGAGCAAGGGGAAACTCCTTCAGTATTGCAACTTCCACATGAACATAATACTAGAGAAGTAGAGCCATTGGTGAGGTGCTCAAGGCACATGTGCCCAATAAGAGTGCATTGGCATGTGAAGCAAAGTTATACACAGTATTGGAGAGTGAAGATGACAATTACAAATCTGAATTTTGCTAAGAATTACTCTCAATGGAACTTGGTAGTGATGCATCCCAACTTGCAGAATGTGACCCAAGTTTTCAGCTTCAACTACTGCCCACTCAATCAGTATGGTAACATCAATGATACAGGGATGTTTTGGGGGATAGAGTACTACAATGAGTTATTACTGACATCAGGAGAGAGTGGAAATGTTCAAACAGAGATACTTCTTCATAAAGATACAGGAATTTTTACTTTCAGTGATGGATGGGCTTTTCCAAGGAGAATCTTATTCAATGGAGATGAATGTGTAATGCCATCTCCAGACCAATATCCAAGGCTTCCAAATAAAGCTCATAGGCTCAGGATAACATCTTTCTTAGTTCTCTTCTCATTGTTGCTTATGGTATCATTATAA 1356 41.45 MEDNKLFYVFGWNPFLFLSQRSTFIFVLIFYSLFSSFLPSYGYDSLDPYANITITWDFLLENSDTYDVKVSIHNFQLFRHVELPGWKLGWSWKGDEVIWGMLGAEATEQGNCSKYIGRELPHCCEKRPVIVDLMPGAPYKLQVANCCKGGVLSSMTQDLSNNGAAFQMNVGKSSDNKMPANFTLGLPGYSCGDPFQVSPTKISKDGGRRWTQVLETWNVTCVYSQFRASSAPSCCVSLSSFYNSTIVPCPQCSCGCQGLEGTKCVEQGETPSVLQLPHEHNTREVEPLVRCSRHMCPIRVHWHVKQSYTQYWRVKMTITNLNFAKNYSQWNLVVMHPNLQNVTQVFSFNYCPLNQYGNINDTGMFWGIEYYNELLLTSGESGNVQTEILLHKDTGIFTFSDGWAFPRRILFNGDECVMPSPDQYPRLPNKAHRLRITSFLVLFSLLLMVSL 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39128616 39132168 + evm.model.ptg000004l.547 HCH11g0834 554301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0834 451 PANTHER PROTEIN COBRA 26 448 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
HCH11g0834 451 Pfam COBRA-like protein 66 224 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH11g0834 451 PIRSF COBRA 15 451 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0834 HCH-Chr11:39128616 HCH8g1231 HCH-Chr8:47672489 7.30E-134 dispersed
HCH11g0834 HCH-Chr11:39128616 HCH9g0320 HCH-Chr9:2011021 2.10E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0834 - - - 0.0