Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0834 ATGGAAGATAACAAGTTATTTTACGTATTTGGTTGGAACCCGTTTTTGTTTTTGAGTCAAAGATCTACGTTTATCTTTGTTTTGATATTCTACTCTCTCTTCTCCTCATTCTTACCTTCCTATGGATATGATTCATTGGACCCTTATGCCAACATTACTATCACTTGGGATTTCTTGCTGGAAAATAGTGATACTTATGATGTGAAGGTATCAATACACAACTTCCAACTGTTTCGCCACGTGGAACTTCCGGGTTGGAAGTTGGGTTGGTCATGGAAGGGTGATGAAGTTATATGGGGGATGTTAGGAGCAGAGGCAACTGAGCAAGGGAATTGCTCCAAATACATAGGCAGGGAGCTTCCACATTGTTGTGAGAAAAGGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAACTTCAAGTTGCCAATTGTTGTAAAGGAGGTGTACTTTCTTCCATGACTCAAGACCTTTCCAATAATGGAGCTGCCTTCCAAATGAATGTTGGAAAATCTTCTGATAACAAAATGCCTGCAAATTTCACTCTTGGACTTCCTGGTTATTCTTGTGGTGACCCTTTTCAAGTCTCTCCAACCAAGATCAGTAAGGACGGCGGTCGTCGGTGGACACAAGTTCTAGAGACATGGAACGTGACCTGCGTTTACTCCCAATTTCGAGCATCATCGGCACCAAGTTGCTGCGTTTCATTATCTTCCTTCTACAACAGCACCATTGTTCCCTGCCCTCAATGCAGCTGTGGTTGCCAAGGCCTAGAGGGAACGAAATGCGTCGAGCAAGGGGAAACTCCTTCAGTATTGCAACTTCCACATGAACATAATACTAGAGAAGTAGAGCCATTGGTGAGGTGCTCAAGGCACATGTGCCCAATAAGAGTGCATTGGCATGTGAAGCAAAGTTATACACAGTATTGGAGAGTGAAGATGACAATTACAAATCTGAATTTTGCTAAGAATTACTCTCAATGGAACTTGGTAGTGATGCATCCCAACTTGCAGAATGTGACCCAAGTTTTCAGCTTCAACTACTGCCCACTCAATCAGTATGGTAACATCAATGATACAGGGATGTTTTGGGGGATAGAGTACTACAATGAGTTATTACTGACATCAGGAGAGAGTGGAAATGTTCAAACAGAGATACTTCTTCATAAAGATACAGGAATTTTTACTTTCAGTGATGGATGGGCTTTTCCAAGGAGAATCTTATTCAATGGAGATGAATGTGTAATGCCATCTCCAGACCAATATCCAAGGCTTCCAAATAAAGCTCATAGGCTCAGGATAACATCTTTCTTAGTTCTCTTCTCATTGTTGCTTATGGTATCATTATAA 1356 41.45 MEDNKLFYVFGWNPFLFLSQRSTFIFVLIFYSLFSSFLPSYGYDSLDPYANITITWDFLLENSDTYDVKVSIHNFQLFRHVELPGWKLGWSWKGDEVIWGMLGAEATEQGNCSKYIGRELPHCCEKRPVIVDLMPGAPYKLQVANCCKGGVLSSMTQDLSNNGAAFQMNVGKSSDNKMPANFTLGLPGYSCGDPFQVSPTKISKDGGRRWTQVLETWNVTCVYSQFRASSAPSCCVSLSSFYNSTIVPCPQCSCGCQGLEGTKCVEQGETPSVLQLPHEHNTREVEPLVRCSRHMCPIRVHWHVKQSYTQYWRVKMTITNLNFAKNYSQWNLVVMHPNLQNVTQVFSFNYCPLNQYGNINDTGMFWGIEYYNELLLTSGESGNVQTEILLHKDTGIFTFSDGWAFPRRILFNGDECVMPSPDQYPRLPNKAHRLRITSFLVLFSLLLMVSL 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39128616 39132168 + evm.model.ptg000004l.547 HCH11g0834 554301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0834 451 PANTHER PROTEIN COBRA 26 448 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
HCH11g0834 451 Pfam COBRA-like protein 66 224 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH11g0834 451 PIRSF COBRA 15 451 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0834 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0834 HCH-Chr11:39128616 HCH8g1231 HCH-Chr8:47672489 7.30E-134 dispersed
HCH11g0834 HCH-Chr11:39128616 HCH9g0320 HCH-Chr9:2011021 2.10E-136 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1231 . 42 441 COBRA Gene Family AT5G60920 80.1 6.3e-209 723.4
HCH9g0320 . 45 446 COBRA Gene Family AT5G60920 76.2 5.3e-200 693.7
HCH3g0128 . 42 440 COBRA Gene Family AT5G60920 74.8 3.2e-197 684.5
HCH10g0911 . 31 429 COBRA Gene Family AT5G60920 68.7 1.8e-179 625.5
HCH8g1230 . 55 454 COBRA Gene Family AT5G60920 67.1 1.0e-174 609.8
HCH11g0834 . 54 449 COBRA Gene Family AT5G60920 54.1 1.9e-128 456.1
HCH8g1232 . 50 224 COBRA Gene Family AT5G60920 77.7 5.5e-88 321.6
HCH9g0320 . 29 449 COBRA Gene Family AT3G02210 75.2 6.7e-204 706.8
HCH8g1231 . 16 441 COBRA Gene Family AT3G02210 73.4 8.2e-202 699.9
HCH3g0128 . 14 431 COBRA Gene Family AT3G02210 74.7 5.9e-200 693.7
HCH10g0911 . 7 429 COBRA Gene Family AT3G02210 65.7 1.1e-177 619.8
HCH8g1230 . 32 455 COBRA Gene Family AT3G02210 66.7 7.0e-177 617.1
HCH11g0834 . 28 451 COBRA Gene Family AT3G02210 53.4 5.4e-137 484.6
HCH8g1232 . 24 224 COBRA Gene Family AT3G02210 74.1 8.2e-93 337.8
HCH8g1231 . 15 446 COBRA Gene Family AT3G29810 74.0 7.5e-200 693.3
HCH9g0320 . 29 445 COBRA Gene Family AT3G29810 73.9 1.9e-198 688.7
HCH3g0128 . 8 428 COBRA Gene Family AT3G29810 75.3 3.2e-198 688.0
HCH10g0911 . 14 410 COBRA Gene Family AT3G29810 66.8 7.6e-176 613.6
HCH8g1230 . 38 432 COBRA Gene Family AT3G29810 66.8 1.1e-171 599.7
HCH11g0834 . 22 442 COBRA Gene Family AT3G29810 53.5 1.7e-135 479.6
HCH8g1232 . 18 224 COBRA Gene Family AT3G29810 71.3 1.8e-92 336.7
HCH10g0911 . 1 339 COBRA Gene Family AT5G15630 82.9 5.7e-179 623.6
HCH8g1230 . 35 363 COBRA Gene Family AT5G15630 83.0 3.4e-176 614.4
HCH8g1231 . 25 353 COBRA Gene Family AT5G15630 72.4 2.5e-150 528.5
HCH9g0320 . 30 357 COBRA Gene Family AT5G15630 67.4 6.5e-143 503.8
HCH3g0128 . 16 355 COBRA Gene Family AT5G15630 66.8 2.5e-142 501.9
HCH11g0834 . 42 360 COBRA Gene Family AT5G15630 51.2 7.1e-97 350.9
HCH8g1232 . 35 224 COBRA Gene Family AT5G15630 74.2 9.3e-89 323.9
HCH9g0320 . 35 221 COBRA Gene Family AT5G60950 59.0 1.4e-63 239.6
HCH8g1231 . 15 218 COBRA Gene Family AT5G60950 55.9 3.4e-62 235.0
HCH8g1232 . 46 226 COBRA Gene Family AT5G60950 58.6 2.2e-61 232.3
HCH3g0128 . 38 218 COBRA Gene Family AT5G60950 57.5 1.1e-60 229.9
HCH10g0911 . 1 207 COBRA Gene Family AT5G60950 53.8 3.0e-58 221.9
HCH8g1230 . 51 231 COBRA Gene Family AT5G60950 55.8 6.2e-56 214.2
HCH11g0834 . 33 432 COBRA Gene Family AT1G09790 60.3 5.5e-150 527.7
HCH8g1230 . 21 436 COBRA Gene Family AT1G09790 51.6 2.7e-133 472.2
HCH8g1231 . 26 424 COBRA Gene Family AT1G09790 53.3 5.2e-132 468.0
HCH9g0320 . 29 427 COBRA Gene Family AT1G09790 53.5 1.5e-131 466.5
HCH10g0911 . 7 413 COBRA Gene Family AT1G09790 51.2 9.7e-131 463.8
HCH3g0128 . 11 426 COBRA Gene Family AT1G09790 51.7 4.1e-129 458.4
HCH7g1047 . 38 655 COBRA Gene Family AT4G16120 66.8 3.6e-254 874.4
HCH6g0773 . 63 671 COBRA Gene Family AT4G16120 54.3 1.1e-210 729.9
HCH12g1161 . 51 666 COBRA Gene Family AT4G16120 53.2 3.3e-207 718.4
HCH7g1047 . 13 643 COBRA Gene Family AT3G16860 62.7 1.7e-240 828.9
HCH6g0773 . 56 676 COBRA Gene Family AT3G16860 52.3 4.1e-202 701.4
HCH12g1161 . 46 666 COBRA Gene Family AT3G16860 52.3 5.9e-201 697.6
HCH7g1047 . 10 638 COBRA Gene Family AT5G49270 62.2 2.3e-240 828.6
HCH6g0773 . 53 658 COBRA Gene Family AT5G49270 52.1 3.2e-202 701.8
HCH12g1161 . 45 646 COBRA Gene Family AT5G49270 51.6 2.6e-196 682.2
HCH6g0773 . 17 657 COBRA Gene Family AT3G20580 64.9 2.3e-261 898.3
HCH12g1161 . 11 667 COBRA Gene Family AT3G20580 62.6 6.6e-256 880.2
HCH7g1047 . 10 632 COBRA Gene Family AT3G20580 53.6 1.2e-204 709.9
HCH6g0773 . 52 679 COBRA Gene Family AT4G27110 63.9 4.6e-249 857.4
HCH12g1161 . 6 668 COBRA Gene Family AT4G27110 60.3 2.7e-241 831.6
HCH7g1047 . 17 651 COBRA Gene Family AT4G27110 50.8 1.3e-192 669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010841 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32