Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0836 | ATGGGGAAAGGACCATTTTCTTTTCGCCGGACTAGTATTCGTCGCCGCTCCAAGAAGGCGGCAGCGACAGCGACGGCTCAGTCGTCTCCGTTGCCTCAGCCACCTTCGCCGATTGGTACCAATTCTCCGCCTATTAATAATAATAGCTTGATTGGTGGTGGTGGTGGGGGGAAAGTGAAGAAGAAGGCTGGAGGAGCTAGGTTGTGGATGCGTCTTGATAGATGGGGGCAGTCAGAGCTTGTGGAGTGCGATAAGAATGCGATTATCCGACGTGCTGCGATTCCGGCGAGGGATTTAAGGATTCTTGGTCCTGTTTTTTCTCAGTCTTCTAACATCCTTGCCAGGGAGAAGGCCATGGTTGTTAATTTAGAATTCATAAAGGCTATAATTACAGCTGAAGAAGTCCTGCTACTAGATCCTCTCCGCCAGGAGGTTATTCCATTTGTGGATCAACTAAGACAACAACTTGTGAAGAAGAGCCCATCTCAGGTCCATGGAGATGGAACCTTGGATGAACGTGAGAACAATGTGAATATCTCCACAGGAAGAAAGTGGTTGCCTATCCCTGAAGCTGTTGAAGGTGTGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCATTAGAGGTTGTCTGTATGTACTTAGATTCCAGTGTGGCAGACCTTGAGAGAGATGCGTATCCTGTATTGGATGAACTGGCTAGGAATGTCAGCACCAAAAATCTTGAACATGTGAGAAGTTTGAAAAGTAATCTTACCCGAATTCTTGCACGTGTACAGAAGGTGAGGGATGAGATAGAACATCTGTTAGACGATAATGAAGATATGGCACAGTTATATTTGACAAGGAAATGGATGCAGAATCAACAAGCTGATGCTTTGTTGAGTGGTGCAGCTTCCAATGGCATCACTGCCGTGGTTCCCCATCTTCCTCGACTTAGTTCCATCAGGAGTGGAAGTATAGTGACCAGCAATCTTTTGGATGATAAGGATGTGGAGGATCTGGAGATGTTGCTCGAGGCATATTTTATGCAGTTGGATGGAACTCGTAATAGGATATTGTCTGTTAGAGAGTACATCGACGACACAGAGGATTATGTCAATATTCAACTTGACAATCAGAGAAATGAACTCATTCAATTTCAGTTGACATTGACTATCGCTTCATTTGCCATAGCTCTTGAAACCTTAATTGCTGGGTTATTTGGTATGAACATCCATTGTACATTGTACGATAGGGAAGGTATATTCGAGTATTTTGTTGGAGGTATTACGGCAGGTTGTCTGTTGATTTTCTTGCTTATTTTAGGGTATGCAAGATGGAAGAAGCTGCTTGGTTCTTGA | 1350 | 44.22 | MGKGPFSFRRTSIRRRSKKAAATATAQSSPLPQPPSPIGTNSPPINNNSLIGGGGGGKVKKKAGGARLWMRLDRWGQSELVECDKNAIIRRAAIPARDLRILGPVFSQSSNILAREKAMVVNLEFIKAIITAEEVLLLDPLRQEVIPFVDQLRQQLVKKSPSQVHGDGTLDERENNVNISTGRKWLPIPEAVEGVQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQADALLSGAASNGITAVVPHLPRLSSIRSGSIVTSNLLDDKDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIALETLIAGLFGMNIHCTLYDREGIFEYFVGGITAGCLLIFLLILGYARWKKLLGS | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 39144320 | 39149492 | - | evm.model.ptg000004l.545 | HCH11g0836 | 554303 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0836 | 449 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
HCH11g0836 | 449 | Coils | Coil | 247 | 281 | - | - | |
HCH11g0836 | 449 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 53 | 446 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
HCH11g0836 | 449 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 385 | 436 | IPR045863 | - | |
HCH11g0836 | 449 | FunFam | Magnesium transporter MRS2-1 | 57 | 140 | - | - | |
HCH11g0836 | 449 | Pfam | CorA-like Mg2+ transporter protein | 340 | 438 | IPR002523 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro) | |
HCH11g0836 | 449 | Gene3D | - | 58 | 140 | - | - | |
HCH11g0836 | 449 | Pfam | Magnesium transporter MRS2-like | 82 | 292 | - | - | |
HCH11g0836 | 449 | Gene3D | Magnesium transport protein CorA, transmembrane region | 143 | 380 | - | - | |
HCH11g0836 | 449 | CDD | Mrs2_Mfm1p-like | 69 | 446 | IPR039204 | - | |
HCH11g0836 | 449 | Gene3D | Magnesium transport protein CorA, transmembrane region | 387 | 447 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0836 | HCH-Chr11:39144320 | HCH5g0064 | HCH-Chr5:389426 | 2.50E-78 | dispersed | |
HCH11g0836 | HCH-Chr11:39144320 | HCH6g1542 | HCH-Chr6:48822187 | 7.40E-86 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0836 | K16075 | - | csv:101203496 | 657.907 |