Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0836 ATGGGGAAAGGACCATTTTCTTTTCGCCGGACTAGTATTCGTCGCCGCTCCAAGAAGGCGGCAGCGACAGCGACGGCTCAGTCGTCTCCGTTGCCTCAGCCACCTTCGCCGATTGGTACCAATTCTCCGCCTATTAATAATAATAGCTTGATTGGTGGTGGTGGTGGGGGGAAAGTGAAGAAGAAGGCTGGAGGAGCTAGGTTGTGGATGCGTCTTGATAGATGGGGGCAGTCAGAGCTTGTGGAGTGCGATAAGAATGCGATTATCCGACGTGCTGCGATTCCGGCGAGGGATTTAAGGATTCTTGGTCCTGTTTTTTCTCAGTCTTCTAACATCCTTGCCAGGGAGAAGGCCATGGTTGTTAATTTAGAATTCATAAAGGCTATAATTACAGCTGAAGAAGTCCTGCTACTAGATCCTCTCCGCCAGGAGGTTATTCCATTTGTGGATCAACTAAGACAACAACTTGTGAAGAAGAGCCCATCTCAGGTCCATGGAGATGGAACCTTGGATGAACGTGAGAACAATGTGAATATCTCCACAGGAAGAAAGTGGTTGCCTATCCCTGAAGCTGTTGAAGGTGTGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCATTAGAGGTTGTCTGTATGTACTTAGATTCCAGTGTGGCAGACCTTGAGAGAGATGCGTATCCTGTATTGGATGAACTGGCTAGGAATGTCAGCACCAAAAATCTTGAACATGTGAGAAGTTTGAAAAGTAATCTTACCCGAATTCTTGCACGTGTACAGAAGGTGAGGGATGAGATAGAACATCTGTTAGACGATAATGAAGATATGGCACAGTTATATTTGACAAGGAAATGGATGCAGAATCAACAAGCTGATGCTTTGTTGAGTGGTGCAGCTTCCAATGGCATCACTGCCGTGGTTCCCCATCTTCCTCGACTTAGTTCCATCAGGAGTGGAAGTATAGTGACCAGCAATCTTTTGGATGATAAGGATGTGGAGGATCTGGAGATGTTGCTCGAGGCATATTTTATGCAGTTGGATGGAACTCGTAATAGGATATTGTCTGTTAGAGAGTACATCGACGACACAGAGGATTATGTCAATATTCAACTTGACAATCAGAGAAATGAACTCATTCAATTTCAGTTGACATTGACTATCGCTTCATTTGCCATAGCTCTTGAAACCTTAATTGCTGGGTTATTTGGTATGAACATCCATTGTACATTGTACGATAGGGAAGGTATATTCGAGTATTTTGTTGGAGGTATTACGGCAGGTTGTCTGTTGATTTTCTTGCTTATTTTAGGGTATGCAAGATGGAAGAAGCTGCTTGGTTCTTGA 1350 44.22 MGKGPFSFRRTSIRRRSKKAAATATAQSSPLPQPPSPIGTNSPPINNNSLIGGGGGGKVKKKAGGARLWMRLDRWGQSELVECDKNAIIRRAAIPARDLRILGPVFSQSSNILAREKAMVVNLEFIKAIITAEEVLLLDPLRQEVIPFVDQLRQQLVKKSPSQVHGDGTLDERENNVNISTGRKWLPIPEAVEGVQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQADALLSGAASNGITAVVPHLPRLSSIRSGSIVTSNLLDDKDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIALETLIAGLFGMNIHCTLYDREGIFEYFVGGITAGCLLIFLLILGYARWKKLLGS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39144320 39149492 - evm.model.ptg000004l.545 HCH11g0836 554303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0836 449 MobiDBLite consensus disorder prediction 1 58 - -
HCH11g0836 449 Coils Coil 247 281 - -
HCH11g0836 449 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 53 446 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
HCH11g0836 449 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 385 436 IPR045863 -
HCH11g0836 449 FunFam Magnesium transporter MRS2-1 57 140 - -
HCH11g0836 449 Pfam CorA-like Mg2+ transporter protein 340 438 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
HCH11g0836 449 Gene3D - 58 140 - -
HCH11g0836 449 Pfam Magnesium transporter MRS2-like 82 292 - -
HCH11g0836 449 Gene3D Magnesium transport protein CorA, transmembrane region 143 380 - -
HCH11g0836 449 CDD Mrs2_Mfm1p-like 69 446 IPR039204 -
HCH11g0836 449 Gene3D Magnesium transport protein CorA, transmembrane region 387 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0836 HCH-Chr11:39144320 HCH5g0064 HCH-Chr5:389426 2.50E-78 dispersed
HCH11g0836 HCH-Chr11:39144320 HCH6g1542 HCH-Chr6:48822187 7.40E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0836 K16075 - csv:101203496 657.907