Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0838 ATGGCATCTCGTTTCTGGACCCAGGGTGGTAGTGATTCTGAAGAGAGTGATTATGAGGATGTGGTTGAGGAAGTTGGAGGAGGAGGTGACCCTAGTTCCCAAACAATTGGAAGCAGATATCTTCAAGCAAATGCCAGTGATAGTGATGATTCTGATGGCCAAAAGCGTGTTATCCGGTCTGCTAAAGATAAGCGTTTTGAGGAGATGTTGGCTACTATTGATCAGATGAAAAATGCAATGAAGATCAATGATTGGGTTAGCTTGCACGAGAGTTTTGATAAGATGAACAAGCAGCTTGAGAAAGTTATGCGGGTCACTGAGTCGGAGAAGGTTCCGACACTTTATATTAAAGCACTTGTTATGTTAGAGGATTTTCTTAATCAAGCCCTTGCTAATAAGGAAGCTATTAAGAAAAAAATGAGTCCTAGCAACGCTAAGGCATTGTATTCAGTGAAACAGAAACTAAAGAAGAATAATAAGCAATATGAAGAGTTGATTAGTAAGTGTAGGGAGAATCCCGAGAGTGAGGAAGAAAAGGATGAGGATGAGGGAGAAGAGGAGGAAGAGGAAACCGATTCTGAAGTTGAGGAGGATCCTTTAAAAATCACTATGTCAGGTTCGGAAGATGAAGATGAGGATGAAGATAATGAGGAGGAGGATCATGGTGGTGCGTGGGTGAAGAAGATGAGCAAAAAAGATAAGCTTATGGATAAGCAGTTTTCGAAGGATCCAAGTGAGATCACATGGGATACTGTTAACAAGAAATTCAAGGAGGTTGTGGCTGCTCGAGGTAAGAAGGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTACCTTCTTGACAAAAGTTGCTAAGACCCCCGCTCAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCTCAATTTGATGTCAATCCTGGTCTCAGTGGGCACATGCCTATCACCGTATGGAAGAAGTGTGTGCAAAATATGCTTGCTATAGTTGATATTCTTTTGCATCACTCTAACATTGTGGTAGATGATATGGTTGAAATTGATGAGAATGAAAGCCAGAAAGGAGCTGACTATAATGGCACAATTCGAGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAAGATAGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCGCATACCCGTGAGTACGTTGAAAGGCTTAGAGATGAGCCAATGTTCATGGTTCTTGCCCAAAATGTCCAAGAATATTTAGAACGAATTGGGGATTACAAAGCAGCTTCCAAAGTGGCCCTAAGGCGTGTTGAACTCATTTATTATAAACCACAAGAGGTATATGATGCCATGAGAAAGCTTGCTGAACAGTCAGAAGATGGAGATAATGGAGATGTAACTGAGAATGCTAAAGTAGTGGAGGAGAGTAAGGGGCCAACTGCTTTTATTGTCACTCCGGAGATTGTGCCTCGCAAACCCACCTTTCCAGAGAGCAATAGAGCTTTTATGGACATTCTGGTGACCCTCATATATCAATATGGAGATGAGCGCACCAAAGCACGAGCTATGCTATGTGATATCTACCAACATGCTCTCTTGGATGAATTTAACATTTCCCGGGACTTATTACTGATGAGTCACTTACAGGATAATATTCATCTCATGGACATTTCCACCCAGATTCTCTTCAACAGGGCAATGGCTCAACTTGGTCTTTGTGGATTTCGGGTTGGTCTCATAAATGAAGGACATGGATGCCTTTCGGAATTATATTCTGGTGGAAGGGTAAAGGAATTGCTAGCACAAGGTGTCTCACAAAGCCGATATCATGAAAAAACTCCTGAACAGGAAAGGCTTGAAAGGAGAAGACAGATGCCATACCACATGCACATAAATCTCGAGCTCCTGGAGGCTGTCCATTTAATTTCTGCTATGCTGCTGGAAGTTCCCAACATGGCGGGCAATGTTCTTGACGCAAAGCGCAGGGTTATTAGTAAGAACTTTAGACGGTTACTTGAGGTGAGTGAGAGACAAACATTTGTCGGTCCTCCTGAAAACGTGAGAGATCATGTAATGGCTGCTACCCGATCCCTTCGTAAGGGCGATTACCAAAAGGCTTTCGATGTCATTGCATCTCTCGATGTTTGGAGGCTACTTAAGAATCGTGATGAAGTGCTGGAAATGGTTAGAGCAAAGATCAAAGAAGAAGCTTTAAGGACTTACCTCCTCACTTACTCTTCATCTTATGATTCTCTGAGTTTGGACCATCTCACTAAAATGTTTGACATTACAGATAGTCAAACACACAGTATAGTTAGCAAGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAAGTGGGTGTATTATGTTCCATGACATTACGCACACCAGGTTACAAGGTCTTGCATTCCAACTAGCAGAGAAGATGTCTATCCTTGCTGAAAGTAATGAGAGGGCAGTGGAGGCGAGAATAGGTGGAGGAGGATTAGATTTACCGAGGAGAAGAGACAACCAAGAATATGCTTCTGGGACTGCAGCCGGGGGTAGTAGGTGGCCCGAGAACTCGTCTTTTACTCAGGGAAGGCAAGGTGGCTTCCGTGCAGCATATAGCAGTGGAGGGCGAGGCCAAGGTGCTGGAGGTGGATATTCTGCTAGGGACCGAACTGGTTACTCAAGAGGAAACAATGCTGGATACCACAGCACCCGTTATCAAGACGCTGCTTATGGGTCAGGAAGGACTGCTTATCAGTCTCGTGCATCGTCCAGAGGATCCCAGATGGACGCCTCAGCTCGCATGGTAAGTCTCAACAAAGGGGTTTATGCTTAA 2814 43.6 MASRFWTQGGSDSEESDYEDVVEEVGGGGDPSSQTIGSRYLQANASDSDDSDGQKRVIRSAKDKRFEEMLATIDQMKNAMKINDWVSLHESFDKMNKQLEKVMRVTESEKVPTLYIKALVMLEDFLNQALANKEAIKKKMSPSNAKALYSVKQKLKKNNKQYEELISKCRENPESEEEKDEDEGEEEEEETDSEVEEDPLKITMSGSEDEDEDEDNEEEDHGGAWVKKMSKKDKLMDKQFSKDPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPITVWKKCVQNMLAIVDILLHHSNIVVDDMVEIDENESQKGADYNGTIRVWGNLVAFVEKIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERIGDYKAASKVALRRVELIYYKPQEVYDAMRKLAEQSEDGDNGDVTENAKVVEESKGPTAFIVTPEIVPRKPTFPESNRAFMDILVTLIYQYGDERTKARAMLCDIYQHALLDEFNISRDLLLMSHLQDNIHLMDISTQILFNRAMAQLGLCGFRVGLINEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAGNVLDAKRRVISKNFRRLLEVSERQTFVGPPENVRDHVMAATRSLRKGDYQKAFDVIASLDVWRLLKNRDEVLEMVRAKIKEEALRTYLLTYSSSYDSLSLDHLTKMFDITDSQTHSIVSKMMINEELHASWDQPSGCIMFHDITHTRLQGLAFQLAEKMSILAESNERAVEARIGGGGLDLPRRRDNQEYASGTAAGGSRWPENSSFTQGRQGGFRAAYSSGGRGQGAGGGYSARDRTGYSRGNNAGYHSTRYQDAAYGSGRTAYQSRASSRGSQMDASARMVSLNKGVYA 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39167052 39171275 - evm.model.ptg000004l.543 HCH11g0838 554305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0838 937 MobiDBLite consensus disorder prediction 838 861 - -
HCH11g0838 937 MobiDBLite consensus disorder prediction 884 900 - -
HCH11g0838 937 MobiDBLite consensus disorder prediction 1 55 - -
HCH11g0838 937 Gene3D - 727 794 IPR036388 -
HCH11g0838 937 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 876 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
HCH11g0838 937 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 883 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)|GO:0031369(InterPro)
HCH11g0838 937 Pfam PCI domain 716 788 IPR000717 -
HCH11g0838 937 SUPERFAMILY Winged helix DNA-binding domain 715 789 IPR036390 -
HCH11g0838 937 MobiDBLite consensus disorder prediction 166 228 - -
HCH11g0838 937 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 IPR000717 -
HCH11g0838 937 Coils Coil 145 172 - -
HCH11g0838 937 MobiDBLite consensus disorder prediction 176 196 - -
HCH11g0838 937 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 650 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
HCH11g0838 937 MobiDBLite consensus disorder prediction 31 48 - -
HCH11g0838 937 MobiDBLite consensus disorder prediction 836 900 - -
HCH11g0838 937 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0838 K03252 - csv:101203990 1417.52