Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0838 | ATGGCATCTCGTTTCTGGACCCAGGGTGGTAGTGATTCTGAAGAGAGTGATTATGAGGATGTGGTTGAGGAAGTTGGAGGAGGAGGTGACCCTAGTTCCCAAACAATTGGAAGCAGATATCTTCAAGCAAATGCCAGTGATAGTGATGATTCTGATGGCCAAAAGCGTGTTATCCGGTCTGCTAAAGATAAGCGTTTTGAGGAGATGTTGGCTACTATTGATCAGATGAAAAATGCAATGAAGATCAATGATTGGGTTAGCTTGCACGAGAGTTTTGATAAGATGAACAAGCAGCTTGAGAAAGTTATGCGGGTCACTGAGTCGGAGAAGGTTCCGACACTTTATATTAAAGCACTTGTTATGTTAGAGGATTTTCTTAATCAAGCCCTTGCTAATAAGGAAGCTATTAAGAAAAAAATGAGTCCTAGCAACGCTAAGGCATTGTATTCAGTGAAACAGAAACTAAAGAAGAATAATAAGCAATATGAAGAGTTGATTAGTAAGTGTAGGGAGAATCCCGAGAGTGAGGAAGAAAAGGATGAGGATGAGGGAGAAGAGGAGGAAGAGGAAACCGATTCTGAAGTTGAGGAGGATCCTTTAAAAATCACTATGTCAGGTTCGGAAGATGAAGATGAGGATGAAGATAATGAGGAGGAGGATCATGGTGGTGCGTGGGTGAAGAAGATGAGCAAAAAAGATAAGCTTATGGATAAGCAGTTTTCGAAGGATCCAAGTGAGATCACATGGGATACTGTTAACAAGAAATTCAAGGAGGTTGTGGCTGCTCGAGGTAAGAAGGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTACCTTCTTGACAAAAGTTGCTAAGACCCCCGCTCAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCTCAATTTGATGTCAATCCTGGTCTCAGTGGGCACATGCCTATCACCGTATGGAAGAAGTGTGTGCAAAATATGCTTGCTATAGTTGATATTCTTTTGCATCACTCTAACATTGTGGTAGATGATATGGTTGAAATTGATGAGAATGAAAGCCAGAAAGGAGCTGACTATAATGGCACAATTCGAGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAAGATAGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCGCATACCCGTGAGTACGTTGAAAGGCTTAGAGATGAGCCAATGTTCATGGTTCTTGCCCAAAATGTCCAAGAATATTTAGAACGAATTGGGGATTACAAAGCAGCTTCCAAAGTGGCCCTAAGGCGTGTTGAACTCATTTATTATAAACCACAAGAGGTATATGATGCCATGAGAAAGCTTGCTGAACAGTCAGAAGATGGAGATAATGGAGATGTAACTGAGAATGCTAAAGTAGTGGAGGAGAGTAAGGGGCCAACTGCTTTTATTGTCACTCCGGAGATTGTGCCTCGCAAACCCACCTTTCCAGAGAGCAATAGAGCTTTTATGGACATTCTGGTGACCCTCATATATCAATATGGAGATGAGCGCACCAAAGCACGAGCTATGCTATGTGATATCTACCAACATGCTCTCTTGGATGAATTTAACATTTCCCGGGACTTATTACTGATGAGTCACTTACAGGATAATATTCATCTCATGGACATTTCCACCCAGATTCTCTTCAACAGGGCAATGGCTCAACTTGGTCTTTGTGGATTTCGGGTTGGTCTCATAAATGAAGGACATGGATGCCTTTCGGAATTATATTCTGGTGGAAGGGTAAAGGAATTGCTAGCACAAGGTGTCTCACAAAGCCGATATCATGAAAAAACTCCTGAACAGGAAAGGCTTGAAAGGAGAAGACAGATGCCATACCACATGCACATAAATCTCGAGCTCCTGGAGGCTGTCCATTTAATTTCTGCTATGCTGCTGGAAGTTCCCAACATGGCGGGCAATGTTCTTGACGCAAAGCGCAGGGTTATTAGTAAGAACTTTAGACGGTTACTTGAGGTGAGTGAGAGACAAACATTTGTCGGTCCTCCTGAAAACGTGAGAGATCATGTAATGGCTGCTACCCGATCCCTTCGTAAGGGCGATTACCAAAAGGCTTTCGATGTCATTGCATCTCTCGATGTTTGGAGGCTACTTAAGAATCGTGATGAAGTGCTGGAAATGGTTAGAGCAAAGATCAAAGAAGAAGCTTTAAGGACTTACCTCCTCACTTACTCTTCATCTTATGATTCTCTGAGTTTGGACCATCTCACTAAAATGTTTGACATTACAGATAGTCAAACACACAGTATAGTTAGCAAGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAAGTGGGTGTATTATGTTCCATGACATTACGCACACCAGGTTACAAGGTCTTGCATTCCAACTAGCAGAGAAGATGTCTATCCTTGCTGAAAGTAATGAGAGGGCAGTGGAGGCGAGAATAGGTGGAGGAGGATTAGATTTACCGAGGAGAAGAGACAACCAAGAATATGCTTCTGGGACTGCAGCCGGGGGTAGTAGGTGGCCCGAGAACTCGTCTTTTACTCAGGGAAGGCAAGGTGGCTTCCGTGCAGCATATAGCAGTGGAGGGCGAGGCCAAGGTGCTGGAGGTGGATATTCTGCTAGGGACCGAACTGGTTACTCAAGAGGAAACAATGCTGGATACCACAGCACCCGTTATCAAGACGCTGCTTATGGGTCAGGAAGGACTGCTTATCAGTCTCGTGCATCGTCCAGAGGATCCCAGATGGACGCCTCAGCTCGCATGGTAAGTCTCAACAAAGGGGTTTATGCTTAA | 2814 | 43.6 | MASRFWTQGGSDSEESDYEDVVEEVGGGGDPSSQTIGSRYLQANASDSDDSDGQKRVIRSAKDKRFEEMLATIDQMKNAMKINDWVSLHESFDKMNKQLEKVMRVTESEKVPTLYIKALVMLEDFLNQALANKEAIKKKMSPSNAKALYSVKQKLKKNNKQYEELISKCRENPESEEEKDEDEGEEEEEETDSEVEEDPLKITMSGSEDEDEDEDNEEEDHGGAWVKKMSKKDKLMDKQFSKDPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPITVWKKCVQNMLAIVDILLHHSNIVVDDMVEIDENESQKGADYNGTIRVWGNLVAFVEKIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERIGDYKAASKVALRRVELIYYKPQEVYDAMRKLAEQSEDGDNGDVTENAKVVEESKGPTAFIVTPEIVPRKPTFPESNRAFMDILVTLIYQYGDERTKARAMLCDIYQHALLDEFNISRDLLLMSHLQDNIHLMDISTQILFNRAMAQLGLCGFRVGLINEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAGNVLDAKRRVISKNFRRLLEVSERQTFVGPPENVRDHVMAATRSLRKGDYQKAFDVIASLDVWRLLKNRDEVLEMVRAKIKEEALRTYLLTYSSSYDSLSLDHLTKMFDITDSQTHSIVSKMMINEELHASWDQPSGCIMFHDITHTRLQGLAFQLAEKMSILAESNERAVEARIGGGGLDLPRRRDNQEYASGTAAGGSRWPENSSFTQGRQGGFRAAYSSGGRGQGAGGGYSARDRTGYSRGNNAGYHSTRYQDAAYGSGRTAYQSRASSRGSQMDASARMVSLNKGVYA | 937 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 39167052 | 39171275 | - | evm.model.ptg000004l.543 | HCH11g0838 | 554305 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0838 | 937 | MobiDBLite | consensus disorder prediction | 838 | 861 | - | - | |
HCH11g0838 | 937 | MobiDBLite | consensus disorder prediction | 884 | 900 | - | - | |
HCH11g0838 | 937 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
HCH11g0838 | 937 | Gene3D | - | 727 | 794 | IPR036388 | - | |
HCH11g0838 | 937 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 2 | 876 | IPR027516 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
HCH11g0838 | 937 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 1 | 883 | IPR027516 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)|GO:0031369(InterPro) | |
HCH11g0838 | 937 | Pfam | PCI domain | 716 | 788 | IPR000717 | - | |
HCH11g0838 | 937 | SUPERFAMILY | Winged helix DNA-binding domain | 715 | 789 | IPR036390 | - | |
HCH11g0838 | 937 | MobiDBLite | consensus disorder prediction | 166 | 228 | - | - | |
HCH11g0838 | 937 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 720 | 808 | IPR000717 | - | |
HCH11g0838 | 937 | Coils | Coil | 145 | 172 | - | - | |
HCH11g0838 | 937 | MobiDBLite | consensus disorder prediction | 176 | 196 | - | - | |
HCH11g0838 | 937 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 45 | 650 | IPR008905 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
HCH11g0838 | 937 | MobiDBLite | consensus disorder prediction | 31 | 48 | - | - | |
HCH11g0838 | 937 | MobiDBLite | consensus disorder prediction | 836 | 900 | - | - | |
HCH11g0838 | 937 | ProSiteProfiles | PCI domain profile. | 619 | 791 | IPR000717 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0838 | K03252 | - | csv:101203990 | 1417.52 |