Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0848 ATGAATCTTGAGAACTTGGATTCTTCCATGGAAAACAATAGCCGTAGGAAAAAGCATGAGCATGAGCATGAACATGGTCGTTCGGAAGAAAAGCCGGAAGGCGGCAGCGGAAGCGGTAACGGTAGCGGAGAAGAGGAGGAGGAAGAAGAAGAAATGCCGTCATCTTTGAGCTTGAGTGAACTTTCAAAGGTGATACTTCCTCCGTTGGGAGTTTCAAGCTATGCTCAAAAGCATAGCCGTTGTAAAGGCCGGTGGATCATTTCCCCTGTGGATTCTAGATACAGGTGGTGGCAGGCATTTATGGTATTATTGGTGGCATACTCAGCATGGGTGTACCCATTGGAAGTGGCATTTTTAAACTTATCACCAAACAAGGGATTATATATTGTTGACAACGTCGTTGATTTTTTTTTCGCCATTGATATCTTTATGACCTTTTTCGTTGCTTTCATTGACCATAGAACTCACCTTCTCGTTAGTGATTCCAAGAAGATTGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATGTTGCATCAACAATCCCATTTGAGTTGCTTGCCTACCTATTCACAGGCAAATATAATGTTGGTCTCCCTTACTCCCTCCTGGGCTTGCTCCGATTTTGGCGGCTGCGGCGTGCCAAGCAACTTTTTACGCGGCTTGAGAAGGACATTAGATTCAGCTATTTCTGGGTTAGATGTACTAGGCTTCTATCTGTTACACTGTTTTATGTGCATTGTGCTGGATGTCTCTACTACTTGTTGGCTGACCGATATCCACATCAAGGACAGACCTGGATTGGTTCTGTCAATCCGAATTACCGAGAGACTAGCCTTCGGATACGATATATTTCATCCTTGTACTGGTCCGTCACCACCATGACCACGGTTGGGTACGGCGATCTTCATGCCGTGAACACTATCGAGATGGTCTTCATCACTTTCTACATGCTCTTCAATCTTGGCTTGACTGCTTACTTGATTGGTAACATGACCAACTTGGTTGTTGAAGGAACTCGCCGCACTATGGAATTTAGAAATAGCATCGAATCGGCCTCGAATTTTGTCAACCGAAACCACCTGCCTCGAACGTTGAAGGAACACATATTGGCATACATGTGCTTGAGATTTAAGGCCGAGAGCCTAAACCAACAACATCTGGTCGAACAGCTTCCGAAGTCGATATGCAAAAGCATCTGTCAACATTTGTTTTTGCCAACTGTGGAGAAAGTCTACCTCTTCAAGGGTGTCTCAAGGGAAACACTTCTGTTACTGGTAACAAAGATGAATGCAGAGTATATACCACCTAAGGAGGATGTGATAATGCAAAACGAAGCCCCGGACGATGTTTATATCATTGTGTCTGGGGAAATGGAAATTATCGACTACGAGAGGGAGGTAGAACGAATCGTCGGAACCTTACACAGTGGAGATATGTTTGGGGAAGTTGGGGCACTTTTTTGCAGAAACCAAAACTTTACATATAGAACCAGAACTCTTTCACAACTCCTGAGGCTAAAAACAAGTGTTTTACAAGAAGCTATGCATGTCAAACCAGAAGACAGTGTAACCATTCTCAAGAACTTTCTTCAGGAAAGAGAGCTGGGCCACAGAATTAATATAGAAGGCACTGCTGCAAATGAAGTGCCTGTGTTGAGTGAAGAAAAGGAGCAAAACTTCAATTGGAAACACTCCATGGAGTTAGAATTTACAAGAGTGAACATATACAAAGGCCATCCAGAAGCTAGAAAAGAGGCTGCTTGTAATGATCCTGGAAGGCTGATTAGATTGCCACATTCAATACAAGAGCTCATAAACATTGCAGGAGAAAAATTTGGATTTGATGCAAGAAATGCAATTTTGACAAATGAAGAAGGGTGCATAATAGATTCAATCGATGTGATTAAGGAAAATGATAAGCTTTTCATAATTCCAGGAAGATAA 1947 42.68 MNLENLDSSMENNSRRKKHEHEHEHGRSEEKPEGGSGSGNGSGEEEEEEEEMPSSLSLSELSKVILPPLGVSSYAQKHSRCKGRWIISPVDSRYRWWQAFMVLLVAYSAWVYPLEVAFLNLSPNKGLYIVDNVVDFFFAIDIFMTFFVAFIDHRTHLLVSDSKKIAIRYLSTWFLMDVASTIPFELLAYLFTGKYNVGLPYSLLGLLRFWRLRRAKQLFTRLEKDIRFSYFWVRCTRLLSVTLFYVHCAGCLYYLLADRYPHQGQTWIGSVNPNYRETSLRIRYISSLYWSVTTMTTVGYGDLHAVNTIEMVFITFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIESASNFVNRNHLPRTLKEHILAYMCLRFKAESLNQQHLVEQLPKSICKSICQHLFLPTVEKVYLFKGVSRETLLLLVTKMNAEYIPPKEDVIMQNEAPDDVYIIVSGEMEIIDYEREVERIVGTLHSGDMFGEVGALFCRNQNFTYRTRTLSQLLRLKTSVLQEAMHVKPEDSVTILKNFLQERELGHRINIEGTAANEVPVLSEEKEQNFNWKHSMELEFTRVNIYKGHPEARKEAACNDPGRLIRLPHSIQELINIAGEKFGFDARNAILTNEEGCIIDSIDVIKENDKLFIIPGR 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39275228 39281626 - evm.model.ptg000004l.533 HCH11g0848 554315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0848 648 ProSiteProfiles KHA domain profile. 573 648 IPR021789 -
HCH11g0848 648 Pfam Cyclic nucleotide-binding domain 434 516 IPR000595 -
HCH11g0848 648 SUPERFAMILY Voltage-gated potassium channels 89 337 - -
HCH11g0848 648 Gene3D Jelly Rolls 381 551 IPR014710 -
HCH11g0848 648 PRINTS EAG/ELK/ERG potassium channel family signature 328 337 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH11g0848 648 PRINTS EAG/ELK/ERG potassium channel family signature 131 141 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH11g0848 648 PRINTS EAG/ELK/ERG potassium channel family signature 284 301 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH11g0848 648 MobiDBLite consensus disorder prediction 10 32 - -
HCH11g0848 648 SMART cnmp_10 414 531 IPR000595 -
HCH11g0848 648 MobiDBLite consensus disorder prediction 1 57 - -
HCH11g0848 648 FunFam Potassium channel KAT3 96 338 - -
HCH11g0848 648 Pfam KHA, dimerisation domain of potassium ion channel 573 644 IPR021789 -
HCH11g0848 648 Gene3D - 95 337 - -
HCH11g0848 648 ProSiteProfiles cAMP/cGMP binding motif profile. 414 533 IPR000595 -
HCH11g0848 648 FunFam Potassium channel KAT2 402 536 - -
HCH11g0848 648 CDD CAP_ED 414 527 IPR000595 -
HCH11g0848 648 PANTHER POTASSIUM CHANNEL AKT1 49 540 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
HCH11g0848 648 SUPERFAMILY cAMP-binding domain-like 341 531 IPR018490 -
HCH11g0848 648 Pfam Ion transport protein 94 343 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0848 HCH-Chr11:39275228 HCH3g0767 HCH-Chr3:5582232 3.50E-137 dispersed
HCH11g0848 HCH-Chr11:39275228 HCH8g0800 HCH-Chr8:44580236 9.50E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0848 K21867 - csv:101205212 955.666