Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0850 ATGAAGATCTTTGTTATCTTCTTTCTCTCACTACTTTCAGTAACCTCAGCTTCTACATGTCCCATGGATCTCAATTATGTTCTTAGAATCCCATGGAATTCATCAGAATGCAAATCCCAGAACTTCAATTCCATTCCCATTTCTTCTCTCAATGACACCACTAAAAACCCTTGTTGCCAAACCCTCTTATCTTTACTTGGAATTGCTCTTTCCCAACACCTCAAAGAAACCTCTCTTTTCCAACTCCCAGACCTCTCTTCCTCCACTTCTTGCCTCCATGATTTCCAATCCAAGCTCTCTGCCCTCTCCCTTCCCGGAAACCTCGTCTCCGATTGCTTTGATCCATCGCAATTCGTTATTGGTCCCGATCTCTGTGCCGGTATCGAAACCACGTCCGATTGGGTTTCGAAACTCGGCCGGACATCACCACTCGACAACGGTTGTCGATCGGACCTCACTATTCCATCCAATTGCGATGTGTGCCTTGCCGCCGGGTTTAGGGTTCAGAATACATTGACAGGAATTGATGGTAATAAATCTCATTCTATGGATTGTTTTTACTTTGCTGTTCTTTATGCTGCTGGAGTTGTGAATGAGGAAGGTCCTGAGGGGGATAGTGCTTTAGCTTGTATTTTTAATGTGCAATTGAATTCTCAAAAGAATTTTGATAGTAAGAATCATTCTTCTTTAGTTTATGGCTTGATTGGTGCTGTTATTGGGGTATTGGTGATTTCTATTTTGTTAGGGATATGTTTTTGGTTTTATAAATGGAAAAGAATAGCTAAGAAGAGGTCTGGTTTAGGGTTTGATAATGAGATGATGAATGAACTAGGGTCTAACTCTAGGCCACATGTGAGACCAAATACTGGTTCAATATGGTTCAAAATTCAGGAGCTTGACAAGGCAACTAATGGTTTTTCTCCAAAGAATTTTATTGGGAGAGGTGGGTTTGGTTTGGTTTATAAAGGGACATTGCCTGATGGAAGTGTGGTTGCAGTCAAGAAAGTGATTGAATCAGATTTTCAAGGAGATGCAGAATTTTGCAATGAGGTTGAAATAATCAGTAATTTGAAGCATAGGAATCTTGTTCCACTTAGAGGTTGCTGCGTGATTGAAGAGGATGAAAGTTATGATGAGAGAGGGAGTCAAAGATACCTTGTTTATGATTACATGCCGAATGGAAATCTCGACGACCATTTGTTTCTTACACCATTTGATCAAGGTGGAACTGGGAAGAAGCCATTGACATGGCCTCAAAGGAAGAGTATCATCTTGGATGTGGCAAAAGGTTTAGCTTATTTGCACTATGGAGTGAAACCTGCCGTATATCACCGGGATATCAAGGCGACAAACATATTGTTAGATGCAGATATGAGAGCTAGAGTGGCAGATTTCGGGCTTGCCAAACAGAGCAAGGAAGGGCAGTCTCATCTCACGACTCGAGTTGCAGGAACTCATGGATATTTAGCCCCAGAATATGCACTTTACGGACAACTAACTGAGAAAAGCGATGTTTACAGCTTTGGGGTGGTTCTTTTGGAGATTATGTGTGGGAGAAAAGCTCTTGATTTCTCTTTGTTGTCATCACCAACAAAGTTCCTGATCACGGATTGGGCTTGGTCATTGGTGAAAGCTGGAAAAGTAGAGGAGACACTGGATCCTTGTTTGCTGAAAGATGGAGATTCTTCTAATTCAAACCCTAAAACCATAATGGAAAGATTTGTCAAGGTTGGAATTCTATGTGCTCATGTGATGGTGGCTTTAAGGCCTACCATTATGGATGCTCTGAAAATATTGGAAGGTGATATTGAAGTTCCCCAAATTCCTGATCGGCCTGCGCCGTATGGGCAACCTTCATTTTCCGGGGGTTGCAGTAACTTCAGCAAATCACCCGCATTGAGCGGGCCTCAATTGCATAGCGGTGACATGCTCAGGTAA 1938 42.16 MKIFVIFFLSLLSVTSASTCPMDLNYVLRIPWNSSECKSQNFNSIPISSLNDTTKNPCCQTLLSLLGIALSQHLKETSLFQLPDLSSSTSCLHDFQSKLSALSLPGNLVSDCFDPSQFVIGPDLCAGIETTSDWVSKLGRTSPLDNGCRSDLTIPSNCDVCLAAGFRVQNTLTGIDGNKSHSMDCFYFAVLYAAGVVNEEGPEGDSALACIFNVQLNSQKNFDSKNHSSLVYGLIGAVIGVLVISILLGICFWFYKWKRIAKKRSGLGFDNEMMNELGSNSRPHVRPNTGSIWFKIQELDKATNGFSPKNFIGRGGFGLVYKGTLPDGSVVAVKKVIESDFQGDAEFCNEVEIISNLKHRNLVPLRGCCVIEEDESYDERGSQRYLVYDYMPNGNLDDHLFLTPFDQGGTGKKPLTWPQRKSIILDVAKGLAYLHYGVKPAVYHRDIKATNILLDADMRARVADFGLAKQSKEGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVLLEIMCGRKALDFSLLSSPTKFLITDWAWSLVKAGKVEETLDPCLLKDGDSSNSNPKTIMERFVKVGILCAHVMVALRPTIMDALKILEGDIEVPQIPDRPAPYGQPSFSGGCSNFSKSPALSGPQLHSGDMLR 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39332078 39334015 - evm.model.ptg000004l.531 HCH11g0850 554317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0850 645 FunFam probable receptor-like protein kinase At1g11050 269 390 - -
HCH11g0850 645 Pfam SPARK 16 186 IPR043891 -
HCH11g0850 645 ProSitePatterns Protein kinases ATP-binding region signature. 312 335 IPR017441 GO:0005524(InterPro)
HCH11g0850 645 CDD STKc_IRAK 312 601 - -
HCH11g0850 645 ProSiteProfiles Protein kinase domain profile. 306 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0850 645 SMART serkin_6 306 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0850 645 Gene3D Transferase(Phosphotransferase) domain 1 391 607 - -
HCH11g0850 645 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 391 607 - -
HCH11g0850 645 PANTHER OS01G0750732 PROTEIN 44 625 IPR050885 -
HCH11g0850 645 Pfam Protein kinase domain 309 523 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0850 645 SUPERFAMILY Protein kinase-like (PK-like) 283 599 IPR011009 -
HCH11g0850 645 Gene3D Phosphorylase Kinase; domain 1 271 390 - -
HCH11g0850 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0850 HCH-Chr11:39332078 HCH12g0835 HCH-Chr12:5452407 1.70E-176 dispersed
HCH11g0850 HCH-Chr11:39332078 HCH4g0953 HCH-Chr4:6123489 1.90E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81069 PF00069 Pkinase 2.50E-42 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0850 - - - 0.0