Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0870 ATGGAAATTGATTTATCACTCAAAATAGAGCATCATAAGGAAGAACTAAAAGAATTATTAGCTCACAAAGATGATGATGAAGAAAAGCAAGAAACTGCACTTGATATGGTTGCCTCTCATGAGTTGAAAGTATATTTCCCAGATAACACGATCAATACTGGAGAGATATCTGAGCTGCAGATGGAGATGGATCGCATGAAGGAGGAAAACAAGCTTTTGAGGAGAGCAGTAGAGCAAACAACGAAAGATTACTATGATCTTGAAATGAAAATTTCTATCATCCAACAAAACAACTTGAAAAAGGATTCCCACAATTTTCTATCATTCCATGGAAATGATAAAAGTAGCTCTCAAGAAACCCAAGAAGAGTCCAAAACAAGAGAAATGGTGAAAAGACAAAGAGTAGCTCCCTCTCCATCAAAAGAGGATGGAATGAGAGAGAGTGAATTAGGGTTATCATTAGGGCTCCAAACAAACATCAATTTGGATCAAAATGATGAGAGAGAATCAGAAGAGAGAGAGAAGAAGAAGAAGAAGGAAGATGTAATGGGAAATACTAATTTCAACTCAGTCCAAAGGCCTCATGAATTGGCAGGAATTGCACCCCCACAGAATAGGAAGGCTAGGGTTTCTGTAAGAGCAAGATGTGAGGCTGCCACTATGAATGATGGGTGCCAATGGAGGAAATATGGTCAGAAAATTGCAAAGGGAAACCCATGCCCTCGAGCCTACTATCGTTGCACAGTGGCACCAGGATGCCCAGTAAGAAAACAGGTTCAAAGATGCTTAGAAGACATGTCAATTCTTATAACAACATATGAAGGAACCCATAACCATCCTCTCCCAGTTGGAGCAACAGCCATGGCTTCCACAGCTTCAGCAGCAGCAGCAGCTGCAGCAGCTTCTTTCATGTTCTTAGACTCAACCAATCTCTCTCTTCCAAATTTCCACAATCCCCATATTATAAACTCTTCTTCTCTCTCTTCAAACTTCATGCCAAACACTCATTTAAACCCTAACCCTAACGACACTTCTAAAGGGCTCCTCTTTGATCTTACGAATAATGGTAGAGGTTTATATAACGCCGCTGCTGCCGCCAACATTGCCAGTTCTTCTTCAAGCTCCATGACCATGCAGCCTTCTGGTTTCAATTGGATGAAAATGAATGCCCATTCAAATTTCCAGAGAAATCATCTTCATCTTCTTCCTCCAGGAATGGTTGATGCTGGGCGACCGTGGAAGGCGGTGGAAGATGAGAATAATAAGCCATCGTTAATGGCAGAAAACGTGTCCGCCATTGCTTCTGATCCAAAATTTAGGGTTGCTGTGGCCGCAGCCATTTCTTCTCTAATTAGTCAAGAGAATCAGACGTCGACCACTCCTCATCGCTCTTCCTTCGGTCACGATGAAGATGGCGATGGTGGCGGCAATGGCGGTGGCGATGCAAACAATAAATGTTTCCTTGAATCGCTCTCAATGAATGGCAAATCGTAA 1494 42.17 MEIDLSLKIEHHKEELKELLAHKDDDEEKQETALDMVASHELKVYFPDNTINTGEISELQMEMDRMKEENKLLRRAVEQTTKDYYDLEMKISIIQQNNLKKDSHNFLSFHGNDKSSSQETQEESKTREMVKRQRVAPSPSKEDGMRESELGLSLGLQTNINLDQNDERESEEREKKKKKEDVMGNTNFNSVQRPHELAGIAPPQNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAAAAAAASFMFLDSTNLSLPNFHNPHIINSSSLSSNFMPNTHLNPNPNDTSKGLLFDLTNNGRGLYNAAAAANIASSSSSSMTMQPSGFNWMKMNAHSNFQRNHLHLLPPGMVDAGRPWKAVEDENNKPSLMAENVSAIASDPKFRVAVAAAISSLISQENQTSTTPHRSSFGHDEDGDGGGNGGGDANNKCFLESLSMNGKS 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39607068 39611077 - evm.model.ptg000004l.511 HCH11g0870 554337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0870 497 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 457 IPR044810 GO:0003700(InterPro)
HCH11g0870 497 MobiDBLite consensus disorder prediction 452 497 - -
HCH11g0870 497 MobiDBLite consensus disorder prediction 105 206 - -
HCH11g0870 497 ProSiteProfiles WRKY domain profile. 216 282 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0870 497 Coils Coil 161 181 - -
HCH11g0870 497 MobiDBLite consensus disorder prediction 164 183 - -
HCH11g0870 497 Gene3D WRKY domain 206 283 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0870 497 FunFam probable WRKY transcription factor 31 206 283 - -
HCH11g0870 497 SUPERFAMILY WRKY DNA-binding domain 214 282 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0870 497 Pfam WRKY DNA -binding domain 222 280 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0870 497 Coils Coil 56 83 - -
HCH11g0870 497 Coils Coil 9 29 - -
HCH11g0870 497 SMART WRKY_cls 221 281 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0870 497 MobiDBLite consensus disorder prediction 116 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0870 HCH-Chr11:39607068 HCH8g1315 HCH-Chr8:48154728 1.20E-36 dispersed
HCH11g0870 HCH-Chr11:39607068 HCH3g0273 HCH-Chr3:1734331 9.80E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32593 PF03106 WRKY 2.00E-24 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0870 - - - 0.0