Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0870 | ATGGAAATTGATTTATCACTCAAAATAGAGCATCATAAGGAAGAACTAAAAGAATTATTAGCTCACAAAGATGATGATGAAGAAAAGCAAGAAACTGCACTTGATATGGTTGCCTCTCATGAGTTGAAAGTATATTTCCCAGATAACACGATCAATACTGGAGAGATATCTGAGCTGCAGATGGAGATGGATCGCATGAAGGAGGAAAACAAGCTTTTGAGGAGAGCAGTAGAGCAAACAACGAAAGATTACTATGATCTTGAAATGAAAATTTCTATCATCCAACAAAACAACTTGAAAAAGGATTCCCACAATTTTCTATCATTCCATGGAAATGATAAAAGTAGCTCTCAAGAAACCCAAGAAGAGTCCAAAACAAGAGAAATGGTGAAAAGACAAAGAGTAGCTCCCTCTCCATCAAAAGAGGATGGAATGAGAGAGAGTGAATTAGGGTTATCATTAGGGCTCCAAACAAACATCAATTTGGATCAAAATGATGAGAGAGAATCAGAAGAGAGAGAGAAGAAGAAGAAGAAGGAAGATGTAATGGGAAATACTAATTTCAACTCAGTCCAAAGGCCTCATGAATTGGCAGGAATTGCACCCCCACAGAATAGGAAGGCTAGGGTTTCTGTAAGAGCAAGATGTGAGGCTGCCACTATGAATGATGGGTGCCAATGGAGGAAATATGGTCAGAAAATTGCAAAGGGAAACCCATGCCCTCGAGCCTACTATCGTTGCACAGTGGCACCAGGATGCCCAGTAAGAAAACAGGTTCAAAGATGCTTAGAAGACATGTCAATTCTTATAACAACATATGAAGGAACCCATAACCATCCTCTCCCAGTTGGAGCAACAGCCATGGCTTCCACAGCTTCAGCAGCAGCAGCAGCTGCAGCAGCTTCTTTCATGTTCTTAGACTCAACCAATCTCTCTCTTCCAAATTTCCACAATCCCCATATTATAAACTCTTCTTCTCTCTCTTCAAACTTCATGCCAAACACTCATTTAAACCCTAACCCTAACGACACTTCTAAAGGGCTCCTCTTTGATCTTACGAATAATGGTAGAGGTTTATATAACGCCGCTGCTGCCGCCAACATTGCCAGTTCTTCTTCAAGCTCCATGACCATGCAGCCTTCTGGTTTCAATTGGATGAAAATGAATGCCCATTCAAATTTCCAGAGAAATCATCTTCATCTTCTTCCTCCAGGAATGGTTGATGCTGGGCGACCGTGGAAGGCGGTGGAAGATGAGAATAATAAGCCATCGTTAATGGCAGAAAACGTGTCCGCCATTGCTTCTGATCCAAAATTTAGGGTTGCTGTGGCCGCAGCCATTTCTTCTCTAATTAGTCAAGAGAATCAGACGTCGACCACTCCTCATCGCTCTTCCTTCGGTCACGATGAAGATGGCGATGGTGGCGGCAATGGCGGTGGCGATGCAAACAATAAATGTTTCCTTGAATCGCTCTCAATGAATGGCAAATCGTAA | 1494 | 42.17 | MEIDLSLKIEHHKEELKELLAHKDDDEEKQETALDMVASHELKVYFPDNTINTGEISELQMEMDRMKEENKLLRRAVEQTTKDYYDLEMKISIIQQNNLKKDSHNFLSFHGNDKSSSQETQEESKTREMVKRQRVAPSPSKEDGMRESELGLSLGLQTNINLDQNDERESEEREKKKKKEDVMGNTNFNSVQRPHELAGIAPPQNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAAAAAAASFMFLDSTNLSLPNFHNPHIINSSSLSSNFMPNTHLNPNPNDTSKGLLFDLTNNGRGLYNAAAAANIASSSSSSMTMQPSGFNWMKMNAHSNFQRNHLHLLPPGMVDAGRPWKAVEDENNKPSLMAENVSAIASDPKFRVAVAAAISSLISQENQTSTTPHRSSFGHDEDGDGGGNGGGDANNKCFLESLSMNGKS | 497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 39607068 | 39611077 | - | evm.model.ptg000004l.511 | HCH11g0870 | 554337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0870 | 497 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 26 | 457 | IPR044810 | GO:0003700(InterPro) | |
HCH11g0870 | 497 | MobiDBLite | consensus disorder prediction | 452 | 497 | - | - | |
HCH11g0870 | 497 | MobiDBLite | consensus disorder prediction | 105 | 206 | - | - | |
HCH11g0870 | 497 | ProSiteProfiles | WRKY domain profile. | 216 | 282 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0870 | 497 | Coils | Coil | 161 | 181 | - | - | |
HCH11g0870 | 497 | MobiDBLite | consensus disorder prediction | 164 | 183 | - | - | |
HCH11g0870 | 497 | Gene3D | WRKY domain | 206 | 283 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0870 | 497 | FunFam | probable WRKY transcription factor 31 | 206 | 283 | - | - | |
HCH11g0870 | 497 | SUPERFAMILY | WRKY DNA-binding domain | 214 | 282 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0870 | 497 | Pfam | WRKY DNA -binding domain | 222 | 280 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0870 | 497 | Coils | Coil | 56 | 83 | - | - | |
HCH11g0870 | 497 | Coils | Coil | 9 | 29 | - | - | |
HCH11g0870 | 497 | SMART | WRKY_cls | 221 | 281 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0870 | 497 | MobiDBLite | consensus disorder prediction | 116 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0870 | HCH-Chr11:39607068 | HCH8g1315 | HCH-Chr8:48154728 | 1.20E-36 | dispersed | |
HCH11g0870 | HCH-Chr11:39607068 | HCH3g0273 | HCH-Chr3:1734331 | 9.80E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32593 | PF03106 | WRKY | 2.00E-24 | CL0274 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0870 | - | - | - | 0.0 |