Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0876 ATGTCATTCCGAAGCATAGTTCGTGATGTGAGGGATAGCATCGGGAGCTTATCTAGACGAGGTTTTGAGGTCAGGCTGAGTGGTCATCATAGAGGAAAGTCTGGTGCATCGTTAAATGATCTACAAGACCAGCCTCCTGTTGTTCAGAATAGTTGCTGGGCTAATCTTCCACCGGAGCTACTGTATGATGTTATTAGGAGACTCGAGGAGAGTGAAAGCACATGGCCTGCACGAAGGAATGTCGTTGCTTGCGCTGGCGTATGCCGATCTTGGAGAATTATGTGCTTGGAGATAGTTAAAGGTCCAGAAATTTGTGGGAAGCTTACATTCCCGGTGTCACTGAAGCAGCCAGGACCGCGGGATGGATCCGTTCAGTGCTTCATTAAGAGGGATAAATCCAACCTTACATACCACCTCTTTCTGTGTCTTAGCCCTGCTCTGTTGGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAGCGCACACGAAGAACCACTAGCACGGAGTATATCATCTCGATGGATGCCGATAACATTTCGAGATCAAGTAGTACTTACATTGGAAAGCTGAGGTCAAATTTTCTTGGCACAAAATTTATTGTCTATGATACCCAACCTCCATACACTGCTGCCCCCTTTCCTCCTCCAGGAAAAACAAGCCGGAGATTTTATTCCAAAAAGGTGTCTCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTATGAACTTAATGTTCTAGGCACGCGGGGACCTCGTAGAATGCATTGTATAATGCATTCAATACCGATATCAGCTCTCGATGCAGGTGGCATTGTCCCTGGCCAACCAGAGCTTCTCCCTACACACTCCCTTGAAGACTCTTTCCGGAGTGCATCGTTCTCCAAAATGCTAGATCACTCGATGGAGTTCAGCAGTGCTAGATTTTCTGAAATCGGGAGGGCATTTGATGGTGACGAGGAAGGCAAGACGAGACCTTTGGTTCTGAAAAACAAGCCCCCGAGATGGCACGAACAGTTGCAATGTTGGTGCCTCAACTTCCGTGGGCGGGTAACAGTTGCATCAGTTAAGAACTTCCAGTTGATTGCTGCAACACAGCCAGCTGCCGGTGCTCCAACACCGTCTCAGCCGGGCCCACCCGAGCATGACAAGATAATTCTGCAGTTTGGGAAGGTTGGTAAAGACATGTTCACTATGGATTATCGATATCCGCTTTCTGCTTTTCAGGCATTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA 1281 46.68 MSFRSIVRDVRDSIGSLSRRGFEVRLSGHHRGKSGASLNDLQDQPPVVQNSCWANLPPELLYDVIRRLEESESTWPARRNVVACAGVCRSWRIMCLEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYTAAPFPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPISALDAGGIVPGQPELLPTHSLEDSFRSASFSKMLDHSMEFSSARFSEIGRAFDGDEEGKTRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39677143 39679928 + evm.model.ptg000004l.505 HCH11g0876 554343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0876 426 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
HCH11g0876 426 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515(InterPro)
HCH11g0876 426 Gene3D Tubby Protein; Chain A 110 426 IPR025659 -
HCH11g0876 426 PANTHER TUBBY-RELATED 43 425 - -
HCH11g0876 426 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
HCH11g0876 426 CDD F-box_AtTLP-like 53 97 - -
HCH11g0876 426 FunFam Tubby-like F-box protein 48 101 - -
HCH11g0876 426 FunFam Tubby-like F-box protein 110 426 - -
HCH11g0876 426 PRINTS Tubby superfamily signature 330 347 IPR000007 -
HCH11g0876 426 PRINTS Tubby superfamily signature 185 209 IPR000007 -
HCH11g0876 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
HCH11g0876 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
HCH11g0876 426 PRINTS Tubby superfamily signature 169 185 IPR000007 -
HCH11g0876 426 PRINTS Tubby superfamily signature 235 262 IPR000007 -
HCH11g0876 426 PRINTS Tubby superfamily signature 348 364 IPR000007 -
HCH11g0876 426 Pfam Tub family 114 421 IPR000007 -
HCH11g0876 426 SUPERFAMILY Tubby C-terminal domain-like 102 426 IPR025659 -
HCH11g0876 426 ProSitePatterns Tub family signature 2. 411 426 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0876 HCH-Chr11:39677143 HCH13g0234 HCH-Chr13:1539533 4.00E-190 dispersed
HCH11g0876 HCH-Chr11:39677143 HCH12g1446 HCH-Chr12:39198182 2.70E-194 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32594 PF01167 Tub 1.20E-116 CL0395 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0876 K19600 - csv:101216314 803.127