Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0894 ATGGTGGTGATCAGAGCTTTGTCTCTGTTGGGTTTGCTTCTGTTTCTTGGAATGCAGCTTCCTACAACAATGGGGGGCTGCCCCTTAGATTTGAGTGGATCGAACTTTACCTTAGTTGCCTCCATATGCTCCAACCATGATGAAAGGGGGAAGTGTTGCCGTTATATTAATGCATTTGTTGCAGTTTCCATTGCTCGGTTTGCAAATGCAACTGGAGAACTCGGAGTTTCTTCGAATTTATCTGACACCTGCCTTCAATCCCTATTTCAAACCATGGAATTGTATGGAGTTCCTAGAAATGCAACAGTTTTCTGTGGGGTTGGAATAAAAATTCCTGTAAATTACGAATGTAAGGGTCGAACAACTGTCACACAGATGCTGCAATCTCCAAAATTTACGAACGTCAGTGAAAATTGCAAATTGCCGCTTTTGGAGGAGAGTATTTGCAGGAAGTGCATGACTGCTGGAATTTTATATCTTCGTAGTCTGCTGGGAACAGAAGACAATATAACGTTAAATACTTGCCGTGACGCTACATTTGCTACACTTGCTAGCCAACTTGATTCTGCTTCAGCCGTTGATCTTGCAAGCTGTTTCTTTGGAGTTCAAGGGCTTTACAAGCCTCCAGCACCACCCCCATCTATGGTGACACCAGATATTACCCCAAGTCCATTGGCTGCTGAAAGCCCAAGGCCATTGATGATAGGTGTTTCTGATGATAAAAGCCATCATTCCTACCACCTAACGTTAGTGCCGGGTATTGGCATTGCAGTGACAGCAGTTTCTATAACAATGTTGGTGGTCTTGATTGTGCTGATTCGAAGGAAAAACCGAGAGCTAAAAGATTCTGAAAAGATGGATGTCAACTTATCAAAATCCTGCCCTCCTCGTCCCATAAAAAAATATCAGGAAGGGGCTTCAGTGTTTCAAAAATTCAGCTATAAGGAGATAAAGAAGGCAACAGATAGCTTTAGTACAACAATTGGACAAGGAGGATATGGAATAGTTTATAAAGCTCGCTTTAGTGATGGCTCGGTGGCAGCTGTGAAGAGGATGAACAAAGTCTCGGAGCAGGGGGAGGATGAATTTGGCAGAGAGATAGAGCTTCTTGCAAGATTGCATCACCGGCATCTCGTTGCTTTAAGAGGCTTTTGTGTTGGAAAGCATGAACGGTTTCTGGTCTATGAGCATATGGCTAATGGAAGCTTGAAAGACCATCTACATTCACCCGGGAGGACCCCTCTAAGTTGGCGGACTAGAATCCAAATTGCCATTGATGTGGCCAATGCTCTGGAGTACCTTCATTATTATTGTGATCCCCCACTGTGCCATAGAGATATCAAGTCCAGCAACATTTTACTGGATGAGAATTTTGTTGCTAAGGTTGCTGATTTTGGCCTTGCGCACGCTTCAAAGGATGGTTCTGTTTTCTTCGAACCAGTAAATACTGATATTCGAGGAACACCAGGTTACATGGATCCCGAATATGTTATAACTCAAGAGCTTACTGAGAAAAGTGATGTATACAGCTACGGTGTGGTACTTTTGGAAATAGTTACTGGCAAACGGGCAATACAAGATGAAAAGAATTTGGTAGAATGGTCCCAAAGGTACATGATTTCAGATTCAAGGATACCTGAACTGGTGGATCCAAGCATTAAGGACGCTTACGACTTGGACCAACTTCACACGGTGGTGTCGATTGTGAGATGGTGCACCCAGGGAGAAGGCAGGGCCAGGCCTTCAATTAAACAGGTGCTCCGGCTTTTGTACGAGAGCTCGGACCCAATGCATCAAGGGCTGGATGAAGCCATTGATGATGAAGATTATGAAGGGAGAGACAGCATAAGCAAAAGGAAAATGCATAAGAGTGATGTGATTTTCCACAGTGGAGATGGAAGGTATCTTGCTTCTTCTTCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGCTCACCACAGTCTCCTCCCAATATTTTGTCTGTCTCAGATCAATTATTTTAA 2019 43.44 MVVIRALSLLGLLLFLGMQLPTTMGGCPLDLSGSNFTLVASICSNHDERGKCCRYINAFVAVSIARFANATGELGVSSNLSDTCLQSLFQTMELYGVPRNATVFCGVGIKIPVNYECKGRTTVTQMLQSPKFTNVSENCKLPLLEESICRKCMTAGILYLRSLLGTEDNITLNTCRDATFATLASQLDSASAVDLASCFFGVQGLYKPPAPPPSMVTPDITPSPLAAESPRPLMIGVSDDKSHHSYHLTLVPGIGIAVTAVSITMLVVLIVLIRRKNRELKDSEKMDVNLSKSCPPRPIKKYQEGASVFQKFSYKEIKKATDSFSTTIGQGGYGIVYKARFSDGSVAAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVGKHERFLVYEHMANGSLKDHLHSPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKDGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDVYSYGVVLLEIVTGKRAIQDEKNLVEWSQRYMISDSRIPELVDPSIKDAYDLDQLHTVVSIVRWCTQGEGRARPSIKQVLRLLYESSDPMHQGLDEAIDDEDYEGRDSISKRKMHKSDVIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNILSVSDQLF 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39884252 39889348 - evm.model.ptg000004l.487 HCH11g0894 554361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0894 672 Gene3D Transferase(Phosphotransferase) domain 1 398 612 - -
HCH11g0894 672 FunFam Putative receptor-like protein kinase 398 598 - -
HCH11g0894 672 CDD STKc_IRAK 328 590 - -
HCH11g0894 672 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
HCH11g0894 672 Gene3D Phosphorylase Kinase; domain 1 287 397 - -
HCH11g0894 672 ProSiteProfiles Protein kinase domain profile. 322 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0894 672 Pfam Protein kinase domain 325 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0894 672 PANTHER OS01G0750732 PROTEIN 168 621 IPR050885 -
HCH11g0894 672 SUPERFAMILY Protein kinase-like (PK-like) 304 591 IPR011009 -
HCH11g0894 672 FunFam Putative receptor-like protein kinase 293 397 - -
HCH11g0894 672 Pfam SPARK 24 164 IPR043891 -
HCH11g0894 672 SMART serkin_6 322 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0894 672 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524(InterPro)
HCH11g0894 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0894 HCH-Chr11:39884252 HCH13g0628 HCH-Chr13:4892828 6.30E-65 dispersed
HCH2g1302 HCH-Chr2:55123051 HCH11g0894 HCH-Chr11:39884252 6.90E-48 dispersed
HCH11g0894 HCH-Chr11:39884252 HCH8g0750 HCH-Chr8:44129632 4.80E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81070 PF00069 Pkinase 1.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0894 - - - 0.0