Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0896 ATGCCTGGGAGTATTGAACCGTTGGATTTGAGTTTGCAAATTCCGTACCATTTCCGGTGCCCGATTTCTCTTGAGCTAATGACTGATCCGGTGACCGTTAGTACGGGTCAGACGTATGACCGGAATAGTATTGAGTCATGGATTGCTACCGGGAATACCAGTTGTCCGGTGACGAGGGCGCCGTTAATGGATTTCACTCTCATTCCGAATCATACTCTCCGCCGGCTTATTCAAGATTGGTGCGTTGCGAATCCGTCTTTCGGAATCGAACGGATTCCGACTCCGAAACAACCGGCTGATCCGTCGCTCGTTCGGTCTCTTCTCTCGCAAGCTTCGTCCAAATCCAGCAACGTCCGTAACGGTTTCCGTAACGGTAATCGTATTTCCGCTCTTCGCCGGTTGAAAGGACTCGCTCGTGATTCGGAGAAGAATCGGTCGCTTATTTCCTCGATGAACGCTCGTGAAATTCTAATCGGTATCGTTTTTTACGATTCGGATGAGGTTGAGGTTTCGGATTTTGATGAATTGTTGAGCTATGAATCGCTGGCGATTCTGGTGATGTTGTCGCTGACGGAATCGGAATGCGTTTTAATCGCGACGGATTCGAAACGAATAGGTTACCTCGCGCATTTGCTGTTTAATCCGTCGATTGAAATTCGGATTAACGCGGCGGCGTTGATTGAAATTGTTATCGCCGGAACACGTGCGTCGGAGATTCGAGCGGAGATTAGTAACATCGACGAATTATTCGAAGGCGTGGTGGAGATTTTGAGAGATTCGTATACGTATCCACGCGCGTTGAAGGTCGGAGTTAGGGCTTTATTCGCGCTCTGTTTAGTGAAGCAAACGAGGCATAAAGCGGTAACGGCGGGAGCGGCGGAGATTCTAATAGATCGATTTTCCGATTTCGAAAAGTACGACGCGGAGCGTGCGTTAGCGACCGTTGAATTGATGTGCCGAATTCCGGCCGGTGTAGATGCTTTCGGAAGTCATGCGCTTACAGTTCCGATGTTAGTGAAGACGATATTGAAGATTTCGGATAGAGCGACGGAATCGGCGGTGGGAGCATTGGTATCGATTTGTTCCTCGTCGGAGGAGAATCAGAGGGAGGCGGTGGCGGCGGGGATATTGACGCAGTTGTTGTTGGTAGTGCAAAGCGATTGTACGGAAAGGGTGAAGAGGAAATCGCAATTGTTGTTGAAGCTTCTTCGAGATTCATGGCCAAGAGATTCCGTTGGAAATTCTGATGATTTTGCTTGCAGTGAAAATGTGGTACCCTTTTGA 1284 48.83 MPGSIEPLDLSLQIPYHFRCPISLELMTDPVTVSTGQTYDRNSIESWIATGNTSCPVTRAPLMDFTLIPNHTLRRLIQDWCVANPSFGIERIPTPKQPADPSLVRSLLSQASSKSSNVRNGFRNGNRISALRRLKGLARDSEKNRSLISSMNAREILIGIVFYDSDEVEVSDFDELLSYESLAILVMLSLTESECVLIATDSKRIGYLAHLLFNPSIEIRINAAALIEIVIAGTRASEIRAEISNIDELFEGVVEILRDSYTYPRALKVGVRALFALCLVKQTRHKAVTAGAAEILIDRFSDFEKYDAERALATVELMCRIPAGVDAFGSHALTVPMLVKTILKISDRATESAVGALVSICSSSEENQREAVAAGILTQLLLVVQSDCTERVKRKSQLLLKLLRDSWPRDSVGNSDDFACSENVVPF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39926611 39927894 + evm.model.ptg000004l.485 HCH11g0896 554363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0896 427 SUPERFAMILY ARM repeat 127 403 IPR016024 -
HCH11g0896 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 88 IPR013083 -
HCH11g0896 427 SUPERFAMILY RING/U-box 11 89 - -
HCH11g0896 427 FunFam RING-type E3 ubiquitin transferase 8 90 - -
HCH11g0896 427 SMART Ubox_2 17 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH11g0896 427 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH11g0896 427 CDD RING-Ubox_PUB 15 67 IPR045210 -
HCH11g0896 427 Pfam U-box domain 14 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH11g0896 427 PANTHER WDSAM1 PROTEIN 12 411 IPR045185 GO:0061630(InterPro)
HCH11g0896 427 Gene3D - 95 416 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0896 HCH-Chr11:39926611 HCH9g1187 HCH-Chr9:18222525 3.10E-49 dispersed
HCH11g0896 HCH-Chr11:39926611 HCH11g0480 HCH-Chr11:5485527 8.10E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0896 - - - 0.0