Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH11g0898 | ATGGCCACCAGTGAGGAGCAGCAAAACCAGGCAGGAAGGCACCAAGAAGTTGGCCATAAAAGCCTTCTGCAAAGTGATGCTCTTTACCAGTATATTTTGGAGACGAGCGTGTACCCCAGAGAGCCAGAATCCATGAAGGAACTCAGAGAATTAACAGCCAAGCATCCATGGAATATAATGACAACATCAGCCGATGAAGGGCAGTTCTTGAACATGCTGTTGAAGCTGATCAACGCCAAGAATACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCCCTCGCCCTCCCCGACGACGGAAAGATTTTGGCAATGGATATAAACAAAGAAAATTACGAACTTGGGCTTCCGGTGATTCAGAAAGCCGGCGTTGCTCACAAGATTGAATTCAAAGAAGGCCCCGCTCTCCCTATTCTCGATGACCTCGTCGCCGATGAGAAAAACCATGGGACCTACGACTTCATCTTCGTGGACGCTGATAAAGACAACTACATAAACTATCACAAGAGATTGATTGACCTGGTCAAAGTTGGGGGAGTAATCGGGTACGACAACACCCTATGGAACGGCTCCGTCGTGGCACCACCTGATGCGCCCTTGCGCAAATACGTTCGATACTACAGAGACTTTGTGGTGGAGCTCAATAAAGCTCTCGCTCTGGACCCTAGGATTGAAATCTGCATGCTCCCTGTTGGTGATGGGATCACTATCTGCCGTCGGATCAAATGA | 741 | 49.66 | MATSEEQQNQAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKILAMDINKENYELGLPVIQKAGVAHKIEFKEGPALPILDDLVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVVELNKALALDPRIEICMLPVGDGITICRRIK | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 39949446 | 39952465 | + | evm.model.ptg000004l.483 | HCH11g0898 | 554365 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH11g0898 | 246 | Gene3D | Vaccinia Virus protein VP39 | 20 | 246 | IPR029063 | - | |
| HCH11g0898 | 246 | Pfam | O-methyltransferase | 34 | 245 | IPR002935 | GO:0008171(InterPro) | |
| HCH11g0898 | 246 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 21 | 245 | IPR002935 | GO:0008171(InterPro) | |
| HCH11g0898 | 246 | PANTHER | O-METHYLTRANSFERASE-RELATED | 18 | 245 | IPR050362 | GO:0008757(PANTHER) | |
| HCH11g0898 | 246 | FunFam | Caffeoyl-CoA O-methyltransferase 1 | 14 | 246 | - | - | |
| HCH11g0898 | 246 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 25 | 244 | IPR029063 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0898 | HCH-Chr11:39949446 | HCH14g0292 | HCH-Chr14:31421691 | 3.30E-104 | dispersed | |
| HCH11g0898 | HCH-Chr11:39949446 | HCH7g0642 | HCH-Chr7:6385283 | 6.80E-134 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH11g0898 | K00588 | - | csv:101205648 | 467.618 |