Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0919 ATGGGTGCTCCGAAGCAGAAATGGACTCAACAAGAAGAATCAGCCCTTAAAGCTGGAGTTGTTAAGCATGGCGCGGGAAAGTGGCGAACAATACTTAAAGATCCTGAATACAGCAGTATACTGTACCTTCGTTCTAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAACGGCTGGGGCTCTCGAGAGAAGGCCAGGTTGGCACTTAAGAGGCTCCCTTCTTCTAAAAAAGATGAGAATAATGGGTCTCAAAGTCTAGATGATATCCAGAGTGATGAAGAATTAGCAGATGCTAAGTCTGTTTCTCTTTCATCCGAAACCAAGCAGATTGCCGGTCCAAAGCGATCAAATGTAAGGTTGGACAATCTTATAATTGAGGCGATTACTACCTTGAGGGAATCTGGAGGCTCTAATAAGACGTCTATTGCTTCATATATAGAGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTATTATCCACAAAATTAAAGTTTTTGACAGCTGGTGGAAAATTGGTCAAGGTTAAAAGGAAGTATAGGCTTGCTCCAGCTTTGCCTCTCTCTGAGAGAAGGAGCTCCATGTTATTGTTGGATGACCAGCAAAGAGCTGCTCCAATGGTTGAGAGGGATGATATCTGTAGCCTGGGAAAAGCTCAGATCGATTTAGAACTAGCCAAGATGAGGACTATGACTTCTGAGGAGGCAGCAGCTGCTGCTGCTCGAGCCGTTGCAGAGGCAGAAGCAGCTATAGCAGAAGCTGAAGAAGCAGCAAGGGAGGCTGAGGCAGCTGAAGCTGATGCAGAAGAAGCACAATCATTTGCAGATGCAGCAATGAAGACGCTGAAAGGAAGAAATCTCCCAAAGATGATGATCCGGGTTTGA 897 45.04 MGAPKQKWTQQEESALKAGVVKHGAGKWRTILKDPEYSSILYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLPSSKKDENNGSQSLDDIQSDEELADAKSVSLSSETKQIAGPKRSNVRLDNLIIEAITTLRESGGSNKTSIASYIEDQYWAPPDFKRLLSTKLKFLTAGGKLVKVKRKYRLAPALPLSERRSSMLLLDDQQRAAPMVERDDICSLGKAQIDLELAKMRTMTSEEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEEAQSFADAAMKTLKGRNLPKMMIRV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40415998 40420463 - evm.model.ptg000004l.462 HCH11g0919 554386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0919 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
HCH11g0919 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH11g0919 298 SUPERFAMILY Winged helix DNA-binding domain 118 195 IPR036390 -
HCH11g0919 298 Gene3D - 117 195 IPR036388 -
HCH11g0919 298 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH11g0919 298 Gene3D - 8 92 - -
HCH11g0919 298 Coils Coil 241 278 - -
HCH11g0919 298 SUPERFAMILY Homeodomain-like 2 69 IPR009057 -
HCH11g0919 298 FunFam Telomere repeat-binding factor 1 118 198 - -
HCH11g0919 298 CDD SANT_TRF 6 56 - -
HCH11g0919 298 SMART sant 4 59 IPR001005 -
HCH11g0919 298 SMART h15plus2 118 183 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH11g0919 298 FunFam Telomere repeat-binding factor 1 8 87 - -
HCH11g0919 298 MobiDBLite consensus disorder prediction 75 95 - -
HCH11g0919 298 FunFam Telomere repeat-binding factor 1 2 58 - -
HCH11g0919 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
HCH11g0919 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
HCH11g0919 298 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0919 HCH-Chr11:40415998 HCH14g0372 HCH-Chr14:32674738 5.10E-67 dispersed
HCH11g0919 HCH-Chr11:40415998 HCH6g0093 HCH-Chr6:1173756 1.90E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32598 PF00538 Linker_histone 8.60E-08 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0919 K09422 - csv:101218411 391.734