Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0919 ATGGGTGCTCCGAAGCAGAAATGGACTCAACAAGAAGAATCAGCCCTTAAAGCTGGAGTTGTTAAGCATGGCGCGGGAAAGTGGCGAACAATACTTAAAGATCCTGAATACAGCAGTATACTGTACCTTCGTTCTAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAACGGCTGGGGCTCTCGAGAGAAGGCCAGGTTGGCACTTAAGAGGCTCCCTTCTTCTAAAAAAGATGAGAATAATGGGTCTCAAAGTCTAGATGATATCCAGAGTGATGAAGAATTAGCAGATGCTAAGTCTGTTTCTCTTTCATCCGAAACCAAGCAGATTGCCGGTCCAAAGCGATCAAATGTAAGGTTGGACAATCTTATAATTGAGGCGATTACTACCTTGAGGGAATCTGGAGGCTCTAATAAGACGTCTATTGCTTCATATATAGAGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTATTATCCACAAAATTAAAGTTTTTGACAGCTGGTGGAAAATTGGTCAAGGTTAAAAGGAAGTATAGGCTTGCTCCAGCTTTGCCTCTCTCTGAGAGAAGGAGCTCCATGTTATTGTTGGATGACCAGCAAAGAGCTGCTCCAATGGTTGAGAGGGATGATATCTGTAGCCTGGGAAAAGCTCAGATCGATTTAGAACTAGCCAAGATGAGGACTATGACTTCTGAGGAGGCAGCAGCTGCTGCTGCTCGAGCCGTTGCAGAGGCAGAAGCAGCTATAGCAGAAGCTGAAGAAGCAGCAAGGGAGGCTGAGGCAGCTGAAGCTGATGCAGAAGAAGCACAATCATTTGCAGATGCAGCAATGAAGACGCTGAAAGGAAGAAATCTCCCAAAGATGATGATCCGGGTTTGA 897 45.04 MGAPKQKWTQQEESALKAGVVKHGAGKWRTILKDPEYSSILYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLPSSKKDENNGSQSLDDIQSDEELADAKSVSLSSETKQIAGPKRSNVRLDNLIIEAITTLRESGGSNKTSIASYIEDQYWAPPDFKRLLSTKLKFLTAGGKLVKVKRKYRLAPALPLSERRSSMLLLDDQQRAAPMVERDDICSLGKAQIDLELAKMRTMTSEEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEEAQSFADAAMKTLKGRNLPKMMIRV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40415998 40420463 - evm.model.ptg000004l.462 HCH11g0919 554386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0919 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
HCH11g0919 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH11g0919 298 SUPERFAMILY Winged helix DNA-binding domain 118 195 IPR036390 -
HCH11g0919 298 Gene3D - 117 195 IPR036388 -
HCH11g0919 298 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH11g0919 298 Gene3D - 8 92 - -
HCH11g0919 298 Coils Coil 241 278 - -
HCH11g0919 298 SUPERFAMILY Homeodomain-like 2 69 IPR009057 -
HCH11g0919 298 FunFam Telomere repeat-binding factor 1 118 198 - -
HCH11g0919 298 CDD SANT_TRF 6 56 - -
HCH11g0919 298 SMART sant 4 59 IPR001005 -
HCH11g0919 298 SMART h15plus2 118 183 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH11g0919 298 FunFam Telomere repeat-binding factor 1 8 87 - -
HCH11g0919 298 MobiDBLite consensus disorder prediction 75 95 - -
HCH11g0919 298 FunFam Telomere repeat-binding factor 1 2 58 - -
HCH11g0919 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
HCH11g0919 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
HCH11g0919 298 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0919 K09422 - - csv:101218411 391.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0919 HCH-Chr11:40415998 HCH14g0372 HCH-Chr14:32674738 5.10E-67 dispersed
HCH11g0919 HCH-Chr11:40415998 HCH6g0093 HCH-Chr6:1173756 1.90E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0919 . 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 66.0 1.1e-82 303.5
HCH14g0372 . 1 245 Single Myb Histone (SMH) Gene Family AT1G49950 52.8 2.5e-61 232.6
HCH14g0372 . 1 245 Single Myb Histone (SMH) Gene Family AT5G67580 52.0 2.0e-63 239.6
HCH14g0372 . 1 245 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 1.1e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32598 PF00538 Linker_histone 8.60E-08 CL0123 HCH TF