Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0934 ATGAGGAAAAGCCGAGGTCGACAAAAGGTGGAGATGGTGAAGATGCCAAACGAGAGCAATCTCCAAGTGACCTTCTCCAAGCGCCGGTCTGGCCTCTTCAAGAAAGCAAGTGAGCTTTGCACTCTATGTGGTGCCGATATCGCCATTATCGTATTCTCGCCCGGGAAAAAGGTTTTCTCCTTCGGTCACCCGTGCGTCGAAGCCCTAATCGATCGTTTCGTGACTCGAAACCCTCCACCGAGCTCCGGTACCCTACAACTCATCGAAGCGCACCGAAATGCCAACGTCCGTGAGCTCAACGCGCAACTCACTCAGGTGATGAACCAGTTAGAGATGGAGAGGAAGCGCGGCGAGGAATTGAACAAGCTCAGAAAGGCGAGCCAGGCGCAATGTTGGTGGGAAATGCCTATTGAAGCTATGGAAATTCATCAGCTTGAACAACTCAAAGCATCAATGGAGGAATTGAAGAAGAATGTGACCCAGCAAGCTGATAGAATTCTGATTCAAACTTCCAATGGAAATTCTCCTGCTGCAGCACAGTATTTTCCAAACCCTACATCAGCTGGGAATCCAATTCCCGGGCATGGTCATAGCCAAACAGGAGGAGTTTTCATTTCTCATCTTCCATACAATTATGGAACATTTGGACGTGGCTTTTTCTGA 663 48.87 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVEALIDRFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVMNQLEMERKRGEELNKLRKASQAQCWWEMPIEAMEIHQLEQLKASMEELKKNVTQQADRILIQTSNGNSPAAAQYFPNPTSAGNPIPGHGHSQTGGVFISHLPYNYGTFGRGFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40594218 40594880 + evm.model.ptg000004l.447 HCH11g0934 554401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0934 220 Gene3D - 83 181 - -
HCH11g0934 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 PANTHER MADS BOX PROTEIN 6 154 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH11g0934 220 Coils Coil 138 165 - -
HCH11g0934 220 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH11g0934 220 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 Coils Coil 93 120 - -
HCH11g0934 220 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0934 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0737 HCH-Chr11:35899588 HCH11g0934 HCH-Chr11:40594218 5.40E-26 dispersed
HCH11g0934 HCH-Chr11:40594218 HCH6g1023 HCH-Chr6:44976161 1.40E-29 dispersed
HCH11g0934 HCH-Chr11:40594218 HCH14g1053 HCH-Chr14:37620094 6.30E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32599 PF00319 SRF-TF 3.30E-24 No_clan HCH TF