Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0934 | ATGAGGAAAAGCCGAGGTCGACAAAAGGTGGAGATGGTGAAGATGCCAAACGAGAGCAATCTCCAAGTGACCTTCTCCAAGCGCCGGTCTGGCCTCTTCAAGAAAGCAAGTGAGCTTTGCACTCTATGTGGTGCCGATATCGCCATTATCGTATTCTCGCCCGGGAAAAAGGTTTTCTCCTTCGGTCACCCGTGCGTCGAAGCCCTAATCGATCGTTTCGTGACTCGAAACCCTCCACCGAGCTCCGGTACCCTACAACTCATCGAAGCGCACCGAAATGCCAACGTCCGTGAGCTCAACGCGCAACTCACTCAGGTGATGAACCAGTTAGAGATGGAGAGGAAGCGCGGCGAGGAATTGAACAAGCTCAGAAAGGCGAGCCAGGCGCAATGTTGGTGGGAAATGCCTATTGAAGCTATGGAAATTCATCAGCTTGAACAACTCAAAGCATCAATGGAGGAATTGAAGAAGAATGTGACCCAGCAAGCTGATAGAATTCTGATTCAAACTTCCAATGGAAATTCTCCTGCTGCAGCACAGTATTTTCCAAACCCTACATCAGCTGGGAATCCAATTCCCGGGCATGGTCATAGCCAAACAGGAGGAGTTTTCATTTCTCATCTTCCATACAATTATGGAACATTTGGACGTGGCTTTTTCTGA | 663 | 48.87 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVEALIDRFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVMNQLEMERKRGEELNKLRKASQAQCWWEMPIEAMEIHQLEQLKASMEELKKNVTQQADRILIQTSNGNSPAAAQYFPNPTSAGNPIPGHGHSQTGGVFISHLPYNYGTFGRGFF | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 40594218 | 40594880 | + | evm.model.ptg000004l.447 | HCH11g0934 | 554401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0934 | 220 | Gene3D | - | 83 | 181 | - | - | |
HCH11g0934 | 220 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 15 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0934 | 220 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0934 | 220 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0934 | 220 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0934 | 220 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0934 | 220 | PANTHER | MADS BOX PROTEIN | 6 | 154 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH11g0934 | 220 | Coils | Coil | 138 | 165 | - | - | |
HCH11g0934 | 220 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
HCH11g0934 | 220 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0934 | 220 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0934 | 220 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0934 | 220 | Coils | Coil | 93 | 120 | - | - | |
HCH11g0934 | 220 | FunFam | Agamous-like MADS-box protein AGL62 | 17 | 83 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0737 | HCH-Chr11:35899588 | HCH11g0934 | HCH-Chr11:40594218 | 5.40E-26 | dispersed | |
HCH11g0934 | HCH-Chr11:40594218 | HCH6g1023 | HCH-Chr6:44976161 | 1.40E-29 | dispersed | |
HCH11g0934 | HCH-Chr11:40594218 | HCH14g1053 | HCH-Chr14:37620094 | 6.30E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32599 | PF00319 | SRF-TF | 3.30E-24 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0934 | - | - | - | 0.0 |