Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0934 ATGAGGAAAAGCCGAGGTCGACAAAAGGTGGAGATGGTGAAGATGCCAAACGAGAGCAATCTCCAAGTGACCTTCTCCAAGCGCCGGTCTGGCCTCTTCAAGAAAGCAAGTGAGCTTTGCACTCTATGTGGTGCCGATATCGCCATTATCGTATTCTCGCCCGGGAAAAAGGTTTTCTCCTTCGGTCACCCGTGCGTCGAAGCCCTAATCGATCGTTTCGTGACTCGAAACCCTCCACCGAGCTCCGGTACCCTACAACTCATCGAAGCGCACCGAAATGCCAACGTCCGTGAGCTCAACGCGCAACTCACTCAGGTGATGAACCAGTTAGAGATGGAGAGGAAGCGCGGCGAGGAATTGAACAAGCTCAGAAAGGCGAGCCAGGCGCAATGTTGGTGGGAAATGCCTATTGAAGCTATGGAAATTCATCAGCTTGAACAACTCAAAGCATCAATGGAGGAATTGAAGAAGAATGTGACCCAGCAAGCTGATAGAATTCTGATTCAAACTTCCAATGGAAATTCTCCTGCTGCAGCACAGTATTTTCCAAACCCTACATCAGCTGGGAATCCAATTCCCGGGCATGGTCATAGCCAAACAGGAGGAGTTTTCATTTCTCATCTTCCATACAATTATGGAACATTTGGACGTGGCTTTTTCTGA 663 48.87 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVEALIDRFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVMNQLEMERKRGEELNKLRKASQAQCWWEMPIEAMEIHQLEQLKASMEELKKNVTQQADRILIQTSNGNSPAAAQYFPNPTSAGNPIPGHGHSQTGGVFISHLPYNYGTFGRGFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40594218 40594880 + evm.model.ptg000004l.447 HCH11g0934 554401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0934 220 Gene3D - 83 181 - -
HCH11g0934 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 PANTHER MADS BOX PROTEIN 6 154 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH11g0934 220 Coils Coil 138 165 - -
HCH11g0934 220 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH11g0934 220 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0934 220 Coils Coil 93 120 - -
HCH11g0934 220 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0737 HCH-Chr11:35899588 HCH11g0934 HCH-Chr11:40594218 5.40E-26 dispersed
HCH11g0934 HCH-Chr11:40594218 HCH6g1023 HCH-Chr6:44976161 1.40E-29 dispersed
HCH11g0934 HCH-Chr11:40594218 HCH14g1053 HCH-Chr14:37620094 6.30E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32599 PF00319 SRF-TF 3.30E-24 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0934 - - - 0.0