Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0951 ATGGCTACTTCTTTGCTTCTCCGATCTCTACGACGTCGCGATGTTACTTCTTCCTCTATCTCTGCTTTCCAATCCTTAACCAATACAAAATCGTCATGGGCAAACTCTCGTCTTGGTCAATCATGGGCAAATTTATCAAGGCCATTTAGTTCAAAACCGGCTGGGAATGATGTGATCGGTATTGATTTGGGTACCACGAATTCTTGTGTTGCTGTCATGGAAGGAAAGAATCCCAAAGTTATTGAAAACTCTGAAGGAGGTAGGACTACACCATCAGTTGTCGCGTTTAATCAGAAAAGTGGATTACTTGTAGGAACACTTGCGAAGAGACAAGCTGTGACAAATCCCACTAATACTGTGTTTGGTACAAAGCGTCTAATTGGAAGACGTTTTGATGATCCTCAAACACAAAAGGAAATGAAGATGGTGCCCTACAAAATAGTCAAAGCTCCAAATGGGGATGCTTGGGTAGAGGCAAATGGGCAGCAATATTCACCCAGTCAAATTGGTGCTTTTGTTTTAACAAAAATGAAAGAGACTGCAGAGGCATATCTTGGAAAGGCTGTATCAAAGGCTGTGATTACTGTTCCAGCTTATTTCAACGATGCACAGAGACAAGCAACAAAGGATGCTGGAAGGATTGCTGGTCTTGATGTTCTTAGAATTATCAATGAACCCACTGCTGCTGCCCTTTCTTATGGAATGAATAATAAGGAGGGTCTTATTGCAGTTTTTGATCTTGGTGGCGGAACGTTTGATGTTTCCATTTTGGAGATATCTAACGGTGTGTTTGAGGTAAAAGCAACAAATGGTGACACATTTTTGGGTGGAGAGGATTTTGATAATACATTGTTGGACTTTCTAGTGAAGGAGTTCAAAAAAACTGAGGGAATCGATCTCAGTAAGGACAAGTTAGCCTTGCAAAGGCTTAGAGAGGCTGCTGAAAAGGCAAAGATTGAATTATCATCTATGCCACAAACCGAAATTAACCTACCTTTTATTACTGCCGATTCATCTGGTCCAAAACATTTGAATATTACTCTGACTAGGTCAGAGTTTGAGAGGCTAGTTAGTGAACTTATTGAAAGGACCAAGGCCCCATGTAAAAGCTGTTTGAAGGATGCCAACATTTCTGCCAAAGATGTGGATGAAGTGCTTTTAGTTGGAGGAATGACTCGTGTCCCCAAAGTGCAAGAAGTTGTCACTGAAATATTTGGAAAGAGTCCTAGTAAAGGAGTGAATCCTGACGAGGCGGTTGCCATGGGAGCTGCAATTCAGGGTGGCATTCTCCGTGGTGATGTCAAGGAATTGCTTCTTCTAGATGTCACCCCACTGTCCCTTGGTATTGAGACGCTTGGTGGCATCTTTACAAGGTTGATCGGCCGGAACACTACAATTCCAACTAAGAAGAGTCAGGTGTTCTCAACTGCTGCTGACAATCAGACTCAGGTTGGTATCAAGGTGTTGCAAGGTGAGCGGGAAATGGCTGCCGACAACAAGATCTTAGGAGAATTCGAGCTAGTTGGAATTCCTCCATCTCCAAGAGGATTGCCTCAGATTGAGGTTGCATTTGACATTGATGCCAATGGTATTGTGACCGTCTCTGCCAAGGACAAGTCCACTGGTAAAGAGCAACAAATAACCATCCGATCTTCTGGAGGGCTCTCAGAAGATGAAATCGAGAAGATGGTCAAGGAAGCAGAAATGTTCGCTCAAAAGGATCAAGAGAGGAAGGCTCTGATTGACCTCAGAAATAGTGCAGATACTACCATCTACAGTATTGAGAAGAGCTTGGCAGAATATAGGGAGAAGTTACCAAGCGAAGTTGCAAAAGAAATAGAGGATGCAGTGGCAGACTTGAGGAATTCAATGTCAGGGGATAACATTGAAGAAATTAAGTCAAAACTCGACACCGCGAACAAAGCCGTGTCAAAGATCGGGCAACATATGGCTGGTGGTTCCGGCGGTGGTGATCAATCTGGTGGATCACAAGGGGGTGAACAGGCTTCAGAAGCCGAGTATGAAGAAGTGAAGAAGTGA 2040 43.38 MATSLLLRSLRRRDVTSSSISAFQSLTNTKSSWANSRLGQSWANLSRPFSSKPAGNDVIGIDLGTTNSCVAVMEGKNPKVIENSEGGRTTPSVVAFNQKSGLLVGTLAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKAVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLDFLVKEFKKTEGIDLSKDKLALQRLREAAEKAKIELSSMPQTEINLPFITADSSGPKHLNITLTRSEFERLVSELIERTKAPCKSCLKDANISAKDVDEVLLVGGMTRVPKVQEVVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLIGRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKILGEFELVGIPPSPRGLPQIEVAFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIEKMVKEAEMFAQKDQERKALIDLRNSADTTIYSIEKSLAEYREKLPSEVAKEIEDAVADLRNSMSGDNIEEIKSKLDTANKAVSKIGQHMAGGSGGGDQSGGSQGGEQASEAEYEEVKK 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40906720 40909737 - evm.model.ptg000004l.430 HCH11g0951 554418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0951 679 FunFam Chaperone protein HscA homolog 241 298 - -
HCH11g0951 679 Gene3D - 59 427 - -
HCH11g0951 679 Hamap Chaperone protein DnaK [dnaK]. 55 677 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
HCH11g0951 679 Gene3D - 555 652 IPR029048 -
HCH11g0951 679 NCBIfam molecular chaperone DnaK 58 650 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
HCH11g0951 679 Gene3D - 234 414 - -
HCH11g0951 679 PANTHER HEAT SHOCK PROTEIN 70KDA 58 613 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0140662(InterPro)
HCH11g0951 679 Pfam Hsp70 protein 58 650 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
HCH11g0951 679 ProSitePatterns Heat shock hsp70 proteins family signature 3. 385 399 IPR018181 -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 436 455 - -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 517 533 - -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 108 116 - -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 85 97 - -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 192 212 - -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 413 433 - -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 250 260 - -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 57 70 - -
HCH11g0951 679 PRINTS 70kDa heat shock protein signature 382 398 - -
HCH11g0951 679 ProSitePatterns Heat shock hsp70 proteins family signature 1. 61 68 IPR018181 -
HCH11g0951 679 FunFam Molecular chaperone DnaK 59 240 - -
HCH11g0951 679 FunFam Chaperone protein DnaK HSP70 426 609 - -
HCH11g0951 679 FunFam Molecular chaperone DnaK 277 364 - -
HCH11g0951 679 FunFam Heat shock protein 9 121 172 - -
HCH11g0951 679 Coils Coil 300 320 - -
HCH11g0951 679 CDD HSPA9-like_NBD 55 430 - -
HCH11g0951 679 ProSitePatterns Heat shock hsp70 proteins family signature 2. 244 257 IPR018181 -
HCH11g0951 679 Gene3D Actin; Chain A, domain 4 277 364 - -
HCH11g0951 679 SUPERFAMILY Actin-like ATPase domain 58 238 IPR043129 -
HCH11g0951 679 FunFam Molecular chaperone DnaK 555 654 - -
HCH11g0951 679 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 432 588 IPR029047 -
HCH11g0951 679 SUPERFAMILY Actin-like ATPase domain 239 430 IPR043129 -
HCH11g0951 679 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 430 554 IPR029047 -
HCH11g0951 679 MobiDBLite consensus disorder prediction 643 679 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0951 HCH-Chr11:40906720 HCH4g1711 HCH-Chr4:20792503 6.80E-192 dispersed
HCH11g0951 HCH-Chr11:40906720 HCH13g0471 HCH-Chr13:3261085 1.40E-157 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0951 K04043 - csv:101216102 1182.93