Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0962 | ATGACAAGACAAAAAATTGAGATAAAGAAGATAGATAATCTTGCTGCAAGGCAAGTGACATTCTCAAAGAGGAGAAAAGGGCTGTTCAAGAAGGCTCAAGAACTTGCAACTCTCTGTGATGCTGATTTAGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTACTCTAGTTCAAGCATGCAAGACTTGCTCAAAAGACACAAAATGTTACCAGAGAACGTTCAAAACATAAGCCAGCCTGCATTTCAGCTTGAAAATAGTGCCCACATCAAATTGACTGAGGAATTTGCAATCAAGACCAATGAACTTATGCATATGAGGGGAGATGAGCTTAAAGGACTTGGAATAGAAGAATTGAAGAAGCTGGAGAAATCACTTGAGATTGGTTTGAATCGTGTAATAGAAGCTAAGGATGAAAAATTTCTAAAAGTGATTGGTGCTGTTAAAGAGAAGGAAGCCTTACTTATAGAAGAGAACCAGACATTACGGAATCAAATGTCAATTTTGTATAGAGACAAAGAACTCATTTGTGGTCATTCCTTGGGGCCACACACCAGTAACAGCAGCTCCTCAGCAAACCCTAGTTCTCAAGATTTTGACAGCTCTGATATTTCTCTTGATTTGAGTTTGTGA | 639 | 38.65 | MTRQKIEIKKIDNLAARQVTFSKRRKGLFKKAQELATLCDADLALIVFSASGKLFDYSSSSMQDLLKRHKMLPENVQNISQPAFQLENSAHIKLTEEFAIKTNELMHMRGDELKGLGIEELKKLEKSLEIGLNRVIEAKDEKFLKVIGAVKEKEALLIEENQTLRNQMSILYRDKELICGHSLGPHTSNSSSSANPSSQDFDSSDISLDLSL | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 41028650 | 41033713 | - | evm.model.ptg000004l.419 | HCH11g0962 | 554429 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0962 | 212 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
HCH11g0962 | 212 | SUPERFAMILY | SRF-like | 2 | 77 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | Gene3D | - | 15 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | Coils | Coil | 121 | 141 | - | - | |
HCH11g0962 | 212 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | Pfam | K-box region | 91 | 168 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH11g0962 | 212 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | CDD | MADS_MEF2_like | 3 | 70 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
HCH11g0962 | 212 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | MobiDBLite | consensus disorder prediction | 183 | 212 | - | - | |
HCH11g0962 | 212 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0962 | 212 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 189 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH11g0962 | 212 | ProSiteProfiles | K-box domain profile. | 84 | 174 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0962 | HCH-Chr11:41028650 | HCH4g0278 | HCH-Chr4:1786307 | 1.60E-46 | dispersed | |
HCH11g0962 | HCH-Chr11:41028650 | HCH11g0963 | HCH-Chr11:41040013 | 1.10E-87 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32600 | PF01486 | K-box | 9.80E-12 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0962 | - | - | - | 0.0 |