Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0962 ATGACAAGACAAAAAATTGAGATAAAGAAGATAGATAATCTTGCTGCAAGGCAAGTGACATTCTCAAAGAGGAGAAAAGGGCTGTTCAAGAAGGCTCAAGAACTTGCAACTCTCTGTGATGCTGATTTAGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTACTCTAGTTCAAGCATGCAAGACTTGCTCAAAAGACACAAAATGTTACCAGAGAACGTTCAAAACATAAGCCAGCCTGCATTTCAGCTTGAAAATAGTGCCCACATCAAATTGACTGAGGAATTTGCAATCAAGACCAATGAACTTATGCATATGAGGGGAGATGAGCTTAAAGGACTTGGAATAGAAGAATTGAAGAAGCTGGAGAAATCACTTGAGATTGGTTTGAATCGTGTAATAGAAGCTAAGGATGAAAAATTTCTAAAAGTGATTGGTGCTGTTAAAGAGAAGGAAGCCTTACTTATAGAAGAGAACCAGACATTACGGAATCAAATGTCAATTTTGTATAGAGACAAAGAACTCATTTGTGGTCATTCCTTGGGGCCACACACCAGTAACAGCAGCTCCTCAGCAAACCCTAGTTCTCAAGATTTTGACAGCTCTGATATTTCTCTTGATTTGAGTTTGTGA 639 38.65 MTRQKIEIKKIDNLAARQVTFSKRRKGLFKKAQELATLCDADLALIVFSASGKLFDYSSSSMQDLLKRHKMLPENVQNISQPAFQLENSAHIKLTEEFAIKTNELMHMRGDELKGLGIEELKKLEKSLEIGLNRVIEAKDEKFLKVIGAVKEKEALLIEENQTLRNQMSILYRDKELICGHSLGPHTSNSSSSANPSSQDFDSSDISLDLSL 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41028650 41033713 - evm.model.ptg000004l.419 HCH11g0962 554429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0962 212 FunFam Transcription factor, MADS-box 13 83 - -
HCH11g0962 212 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 Gene3D - 15 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 Coils Coil 121 141 - -
HCH11g0962 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 Pfam K-box region 91 168 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH11g0962 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH11g0962 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 MobiDBLite consensus disorder prediction 183 212 - -
HCH11g0962 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0962 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH11g0962 212 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0962 HCH-Chr11:41028650 HCH4g0278 HCH-Chr4:1786307 1.60E-46 dispersed
HCH11g0962 HCH-Chr11:41028650 HCH11g0963 HCH-Chr11:41040013 1.10E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32600 PF01486 K-box 9.80E-12 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0962 - - - 0.0