Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0963 | ATGACGGGTACGAGGGTACGCAAGTATCATAAATTATGGTCAGTGATCAGTCTGCCATTGGGTTTCGAGGCAAACCTGTCTGGTTCTAACAGCAATTTAGTACGACAACATAGAAGGAAGGAAAAGCAAAGAATAGAAAGAAAAGAAGGTCTGTGGAGAAAAATGACAAGACAGAAGATTGAGATAAAGAAGATAGATAATACAGCTGCAAGGCAAGTGACATTTTCAAAGAGAAGAAGAGGACTTTTCAAGAAGGCTCAAGAACTTGCAACTCTATGTGATGCTGATTTAGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTACTCCAGTTCATGCTTGCAGAAGTTACTCAGACGGCACAAAATGTTACCAGAGAATGTTCAGAACATAAGCCAAAATGCATATCAGCTTGAAAACAGTGCCTACGCCAAATTGACTGAGGAATTTGCAATCAAGACCAATGAACTTAGGCGTATGAGAGGAGAGGAACTTAAAGGACTTGGAATAGAAGAATTAAAGCACCTGGAGAAATCACTTGAGATTGGTATGAGTCGTGTTGTAGAAGCTAAGGATGAAAAATTTCTTAAAGAGATCAGTGCCATTAAGGAGAAGGAAGCATTGCTTAGGGAAGAGAACCAGAGATTAAGGAATCAAATGTCAAATTTGTATAGAGACAAAGATGAAATATTTTGTGGCCATTCCTTGGCTTCAAACACCAGTAACAGCAGCTCCTCAGAAAACCCTAATTCTCTTGATAGCTCTGACATTTCTCTCAAGCTGGGTCTATGA | 798 | 39.6 | MTGTRVRKYHKLWSVISLPLGFEANLSGSNSNLVRQHRRKEKQRIERKEGLWRKMTRQKIEIKKIDNTAARQVTFSKRRRGLFKKAQELATLCDADLALIVFSASGKLFDYSSSCLQKLLRRHKMLPENVQNISQNAYQLENSAYAKLTEEFAIKTNELRRMRGEELKGLGIEELKHLEKSLEIGMSRVVEAKDEKFLKEISAIKEKEALLREENQRLRNQMSNLYRDKDEIFCGHSLASNTSNSSSSENPNSLDSSDISLKLGL | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 41040013 | 41046831 | - | evm.model.ptg000004l.418 | HCH11g0963 | 554430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0963 | 265 | CDD | MADS_MEF2_like | 57 | 124 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
HCH11g0963 | 265 | PRINTS | MADS domain signature | 92 | 113 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0963 | 265 | PRINTS | MADS domain signature | 77 | 92 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0963 | 265 | PRINTS | MADS domain signature | 57 | 77 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0963 | 265 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 64 | 111 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0963 | 265 | ProSitePatterns | MADS-box domain signature. | 57 | 111 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0963 | 265 | ProSiteProfiles | K-box domain profile. | 138 | 228 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH11g0963 | 265 | Coils | Coil | 145 | 165 | - | - | |
HCH11g0963 | 265 | Pfam | K-box region | 134 | 222 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH11g0963 | 265 | SUPERFAMILY | SRF-like | 55 | 127 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0963 | 265 | MobiDBLite | consensus disorder prediction | 240 | 259 | - | - | |
HCH11g0963 | 265 | ProSiteProfiles | MADS-box domain profile. | 55 | 115 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0963 | 265 | Gene3D | - | 68 | 147 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g0963 | 265 | Coils | Coil | 201 | 228 | - | - | |
HCH11g0963 | 265 | MobiDBLite | consensus disorder prediction | 240 | 265 | - | - | |
HCH11g0963 | 265 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 55 | 244 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH11g0963 | 265 | SMART | madsneu2 | 55 | 114 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0963 | HCH-Chr11:41040013 | HCH14g0447 | HCH-Chr14:33491842 | 2.40E-44 | dispersed | |
HCH11g0962 | HCH-Chr11:41028650 | HCH11g0963 | HCH-Chr11:41040013 | 1.10E-87 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32601 | PF01486 | K-box | 8.00E-15 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0963 | - | - | - | 0.0 |