Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0963 ATGACGGGTACGAGGGTACGCAAGTATCATAAATTATGGTCAGTGATCAGTCTGCCATTGGGTTTCGAGGCAAACCTGTCTGGTTCTAACAGCAATTTAGTACGACAACATAGAAGGAAGGAAAAGCAAAGAATAGAAAGAAAAGAAGGTCTGTGGAGAAAAATGACAAGACAGAAGATTGAGATAAAGAAGATAGATAATACAGCTGCAAGGCAAGTGACATTTTCAAAGAGAAGAAGAGGACTTTTCAAGAAGGCTCAAGAACTTGCAACTCTATGTGATGCTGATTTAGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTACTCCAGTTCATGCTTGCAGAAGTTACTCAGACGGCACAAAATGTTACCAGAGAATGTTCAGAACATAAGCCAAAATGCATATCAGCTTGAAAACAGTGCCTACGCCAAATTGACTGAGGAATTTGCAATCAAGACCAATGAACTTAGGCGTATGAGAGGAGAGGAACTTAAAGGACTTGGAATAGAAGAATTAAAGCACCTGGAGAAATCACTTGAGATTGGTATGAGTCGTGTTGTAGAAGCTAAGGATGAAAAATTTCTTAAAGAGATCAGTGCCATTAAGGAGAAGGAAGCATTGCTTAGGGAAGAGAACCAGAGATTAAGGAATCAAATGTCAAATTTGTATAGAGACAAAGATGAAATATTTTGTGGCCATTCCTTGGCTTCAAACACCAGTAACAGCAGCTCCTCAGAAAACCCTAATTCTCTTGATAGCTCTGACATTTCTCTCAAGCTGGGTCTATGA 798 39.6 MTGTRVRKYHKLWSVISLPLGFEANLSGSNSNLVRQHRRKEKQRIERKEGLWRKMTRQKIEIKKIDNTAARQVTFSKRRRGLFKKAQELATLCDADLALIVFSASGKLFDYSSSCLQKLLRRHKMLPENVQNISQNAYQLENSAYAKLTEEFAIKTNELRRMRGEELKGLGIEELKHLEKSLEIGMSRVVEAKDEKFLKEISAIKEKEALLREENQRLRNQMSNLYRDKDEIFCGHSLASNTSNSSSSENPNSLDSSDISLKLGL 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41040013 41046831 - evm.model.ptg000004l.418 HCH11g0963 554430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0963 265 CDD MADS_MEF2_like 57 124 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH11g0963 265 PRINTS MADS domain signature 92 113 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0963 265 PRINTS MADS domain signature 77 92 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0963 265 PRINTS MADS domain signature 57 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0963 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 64 111 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0963 265 ProSitePatterns MADS-box domain signature. 57 111 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0963 265 ProSiteProfiles K-box domain profile. 138 228 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH11g0963 265 Coils Coil 145 165 - -
HCH11g0963 265 Pfam K-box region 134 222 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH11g0963 265 SUPERFAMILY SRF-like 55 127 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0963 265 MobiDBLite consensus disorder prediction 240 259 - -
HCH11g0963 265 ProSiteProfiles MADS-box domain profile. 55 115 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0963 265 Gene3D - 68 147 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g0963 265 Coils Coil 201 228 - -
HCH11g0963 265 MobiDBLite consensus disorder prediction 240 265 - -
HCH11g0963 265 PANTHER SERUM RESPONSE FACTOR HOMOLOG 55 244 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH11g0963 265 SMART madsneu2 55 114 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0963 HCH-Chr11:41040013 HCH14g0447 HCH-Chr14:33491842 2.40E-44 dispersed
HCH11g0962 HCH-Chr11:41028650 HCH11g0963 HCH-Chr11:41040013 1.10E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32601 PF01486 K-box 8.00E-15 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0963 - - - 0.0