Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0980 ATGGAGAGTTTTGCCCTTCAATCTCTTTCCCTTTCCACCACTTCTTCCTTTTCTCTCCATTCTCGCATCTCTCTCCTTCATCGCCCACGACCCATTTCTTCTTTTCCATCAATCTCCATTCCCAATTCACCGTTTCCCAATTCTCCAACTACCCTTCTCATTTCTCCACCTTTTCTTCATAACCCAATTGTGAAATCTCGTGGGGTGTTGTTGAAGATGAATTATTCTCAATCTCCGGATAGGGAAAATCAGATTCCGGCACCGCCGCCGCCACGAACCCGACCTCCCCGACAAGGAGCTAAACCAATCCCATTACTTGTTTCTGTTGCCATTGGGTTGATTGTTCGTTTTGCTGTCCCTAAACCAACTGATGTCACTTCTCAAGCTTGGCAATTGTTGTCGATTTTCCTTTCTACGATTGCCGGGCTCGTTTTGAGCCCGTTGCCGGTCGGGGCGTGGGCTTTTCTTGGTCTAACTGTGGCTGTTGTTACTAAGACATTGACGTTTGCTGCTGCTTTTAGTGCTTTTACTAGTGAGGTGATTTGGTTGATTGTTATTTCTTTCTTTTTTGCACGTGGGTTTGTGAAGACTGGATTAGGGGATAGGATTGCTACTTATTTTGTTAAGTGGATGGGGAAGAGTACGCTTGGATTGTCTTATGGATTGACAATTAGTGAGGCATTGATTGCCCCTGCAATGCCGAGCACGACTGCGAGAGCTGGCGGTGTGTTTTTGCCAATCATTAAGTCATTGTCGCTTGCTGCTGGGAGTAAACCGAAGGATCCTTCGGCGAAAAAGATCGGTGCTTATCTTGTTCAGTCTCAATTTCAGAGTGCCGGTAACTCTAGTGCCCTTTTCCTAACCGCTGCTGCTCAAAATATGTTGTGCCTTAAATTAGCTGAAGAACTTGGTGTACAAATATCTAGCCCCTGGCTTACTTGGTTCAAGGTTGCTAGTATTCCAGCAGCCGTCGGTCTTGCAGTGACTCCAGCAATCCTATACTATATTTTTCCTCCAGAAACCAAAGACACACCGGACGCCCCCGCCATGGCTACAAGAAAATTGGAGGCTATGGGTCCTGTCACGAAAAATGAATGGATCATGGTTGCTACTATGGTTCTTGCAGTCTCATTATGGATCGCTGGAGAGGCCCTCCACATACCCAGTGTTGTGGCTGCGATGATTGGCTTATCAGTTCTCCTTGTATTGGGAGTCCTTGATTGGGATGACTGCTTAGCCGAAAAGTCAGCCTGGGATACCTTGGCTTGGTTTGCTGTCCTCGTCGGCATGGCTGGCCAATTAACAAGTCTTGGTCTTGTGAGTTGGATGTCTACTTCTGTGGCCCATCTTCTCAAATCGCTCTCCCTGAGCTGGCCCATAACCTTTGTTATTCTTCAGGCAGCTTACTTCTTCATTCACTACCTCTTTGCTAGCCAAACAGGTCATGTTGGAGCTTTATATTCTGCATTCCTTGCTATGCACTTGGCTGCTAAGGTACCTGGTGTTTTGGCAGCTTTGGCCTTGGCTTACAACACAAATCTTTTTGGTGCTCTGACTCATTACAGTAGCGGCCAAGCGGCTGTTTACTATGGAGCTGGTTACGTCGAGCTACCCGACGTATTTAAAGTCGGGTTGATGATGGCAATTGTTAATGCTACTATTTGGGGTGTTGTTGGAGGTATTTGGTGGAAGATTCTGGGTCTATACTGA 1710 46.61 MESFALQSLSLSTTSSFSLHSRISLLHRPRPISSFPSISIPNSPFPNSPTTLLISPPFLHNPIVKSRGVLLKMNYSQSPDRENQIPAPPPPRTRPPRQGAKPIPLLVSVAIGLIVRFAVPKPTDVTSQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTVAVVTKTLTFAAAFSAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWMGKSTLGLSYGLTISEALIAPAMPSTTARAGGVFLPIIKSLSLAAGSKPKDPSAKKIGAYLVQSQFQSAGNSSALFLTAAAQNMLCLKLAEELGVQISSPWLTWFKVASIPAAVGLAVTPAILYYIFPPETKDTPDAPAMATRKLEAMGPVTKNEWIMVATMVLAVSLWIAGEALHIPSVVAAMIGLSVLLVLGVLDWDDCLAEKSAWDTLAWFAVLVGMAGQLTSLGLVSWMSTSVAHLLKSLSLSWPITFVILQAAYFFIHYLFASQTGHVGALYSAFLAMHLAAKVPGVLAALALAYNTNLFGALTHYSSGQAAVYYGAGYVELPDVFKVGLMMAIVNATIWGVVGGIWWKILGLY 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41330124 41333982 + evm.model.ptg000004l.401 HCH11g0980 554447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0980 569 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 16 569 IPR030676 GO:0005215(PANTHER)
HCH11g0980 569 Pfam Sodium:sulfate symporter transmembrane region 104 568 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
HCH11g0980 569 NCBIfam DASS family sodium-coupled anion symporter 120 563 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
HCH11g0980 569 MobiDBLite consensus disorder prediction 83 98 - -
HCH11g0980 569 MobiDBLite consensus disorder prediction 78 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0980 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0980 HCH-Chr11:41330124 HCH2g1374 HCH-Chr2:55555405 5.40E-126 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0942 . 1 406 Antiporters AT5G46110 77.6 6.2e-172 600.5
HCH1g0878 . 76 408 Antiporters AT5G46110 79.6 1.1e-147 520.0
HCH12g1168 . 1 387 Antiporters AT5G54800 75.1 6.3e-158 553.9
HCH6g0777 . 1 397 Antiporters AT5G54800 72.6 6.9e-157 550.4
HCH14g0830 . 22 391 Antiporters AT5G54800 76.3 8.5e-155 543.5
HCH13g0833 . 25 392 Antiporters AT3G01550 60.1 4.3e-119 424.9
HCH3g0343 . 58 413 Antiporters AT3G01550 58.7 1.8e-109 392.9
HCH3g0343 . 1 415 Antiporters AT5G33320 67.5 5.6e-149 524.2
HCH13g0833 . 53 396 Antiporters AT5G33320 60.8 4.2e-112 401.7
HCH14g0830 . 1 388 Antiporters AT1G61800 76.0 1.2e-162 569.7
HCH6g0777 . 42 398 Antiporters AT1G61800 77.6 1.1e-155 546.6
HCH12g1168 . 41 388 Antiporters AT1G61800 77.3 2.2e-153 538.9
HCH7g1518 . 100 400 Antiporters AT1G61800 51.5 2.0e-85 313.2
HCH7g1518 . 62 414 Antiporters AT5G17630 76.7 1.8e-150 529.3
HCH12g1168 . 81 386 Antiporters AT5G17630 54.4 8.7e-89 324.3
HCH6g0777 . 102 396 Antiporters AT5G17630 55.7 9.6e-88 320.9
HCH14g0830 . 92 389 Antiporters AT5G17630 54.2 4.8e-87 318.5
HCH6g0909 . 10 400 Antiporters AT3G13320 74.7 4.5e-160 561.2
HCH2g0639 . 72 445 Antiporters AT3G13320 76.9 1.0e-156 550.1
HCH6g0027 . 1 436 Antiporters AT3G13320 67.0 9.6e-155 543.5
HCH9g0774 . 5 432 Antiporters AT2G38170 68.8 6.9e-159 557.4
HCH11g0094 . 20 430 Antiporters AT2G38170 62.6 7.0e-135 477.6
HCH3g1442 . 51 432 Antiporters AT2G38170 59.5 3.5e-118 422.2
HCH9g0774 . 1 400 Antiporters AT3G51860 69.3 9.3e-148 520.4
HCH11g0094 . 20 400 Antiporters AT3G51860 66.7 4.6e-131 464.9
HCH3g1442 . 52 400 Antiporters AT3G51860 62.9 1.8e-114 409.8
HCH2g0639 . 69 416 Antiporters AT3G51860 52.2 3.2e-84 309.3
HCH9g0774 . 34 437 Antiporters AT5G01490 61.9 8.7e-135 477.2
HCH11g0094 . 29 440 Antiporters AT5G01490 59.7 1.4e-129 459.9
HCH3g1442 . 50 434 Antiporters AT5G01490 56.7 4.5e-115 411.8
HCH6g0027 . 65 436 Antiporters AT5G01490 50.3 2.0e-94 343.2
HCH6g0909 . 30 400 Antiporters AT1G55720 73.7 4.0e-148 521.5
HCH2g0639 . 72 445 Antiporters AT1G55720 72.8 1.8e-145 512.7
HCH6g0027 . 72 433 Antiporters AT1G55720 71.7 5.2e-140 494.6
HCH6g0909 . 10 400 Antiporters AT1G55730 75.2 3.6e-162 568.2
HCH2g0639 . 60 445 Antiporters AT1G55730 74.9 4.2e-158 554.7
HCH6g0027 . 59 437 Antiporters AT1G55730 74.5 7.4e-155 543.9
HCH9g0774 . 59 433 Antiporters AT1G55730 50.1 2.4e-97 352.8
HCH8g0159 . 4 535 Antiporters AT5G27150 79.4 3.1e-240 827.8
HCH6g1660 . 22 527 Antiporters AT5G27150 73.6 1.3e-214 742.7
HCH4g0978 . 21 525 Antiporters AT5G27150 70.3 2.9e-201 698.4
HCH4g0977 . 26 532 Antiporters AT5G27150 63.4 3.4e-178 621.7
HCH12g1234 . 12 516 Antiporters AT5G27150 62.3 4.0e-171 598.2
HCH6g1660 . 10 536 Antiporters AT3G06370 71.3 1.5e-210 729.2
HCH8g0159 . 10 536 Antiporters AT3G06370 71.1 4.7e-207 717.6
HCH4g0978 . 21 527 Antiporters AT3G06370 66.1 2.0e-186 649.0
HCH4g0977 . 23 534 Antiporters AT3G06370 62.5 1.4e-174 609.8
HCH12g1234 . 5 525 Antiporters AT3G06370 60.0 2.4e-163 572.4
HCH12g1234 . 1 522 Antiporters AT5G55470 71.9 1.3e-217 752.7
HCH8g0159 . 18 520 Antiporters AT5G55470 59.8 1.7e-169 592.8
HCH6g1660 . 11 514 Antiporters AT5G55470 59.3 1.8e-168 589.3
HCH4g0978 . 1 511 Antiporters AT5G55470 54.4 1.2e-151 533.5
HCH4g0977 . 18 523 Antiporters AT5G55470 54.7 8.0e-148 520.8
HCH8g0159 . 4 537 Antiporters AT3G05030 79.2 1.9e-240 828.6
HCH6g1660 . 22 535 Antiporters AT3G05030 74.1 3.0e-222 768.1
HCH4g0978 . 21 528 Antiporters AT3G05030 69.7 2.6e-202 701.8
HCH4g0977 . 26 532 Antiporters AT3G05030 63.7 7.4e-181 630.6
HCH12g1234 . 12 516 Antiporters AT3G05030 61.6 9.7e-173 603.6
HCH6g0199 . 102 667 Antiporters AT1G15460 68.3 4.7e-226 780.8
HCH4g0416 . 99 655 Antiporters AT1G15460 67.5 2.5e-219 758.4
HCH6g0432 . 102 645 Antiporters AT1G15460 59.4 7.1e-182 634.0
HCH3g0342 . 102 644 Antiporters AT1G15460 57.0 7.6e-176 614.0
HCH6g0432 . 3 709 Antiporters AT3G06450 69.1 1.3e-292 1002.3
HCH3g0342 . 3 680 Antiporters AT3G06450 68.3 3.7e-276 947.6
HCH4g0416 . 3 634 Antiporters AT3G06450 55.8 5.6e-216 747.7
HCH6g0199 . 7 647 Antiporters AT3G06450 55.2 1.5e-213 739.6
HCH6g0432 . 1 715 Antiporters AT2G47160 79.5 0.0e+00 1161.4
HCH3g0342 . 1 680 Antiporters AT2G47160 74.1 1.6e-303 1038.5
HCH6g0199 . 1 647 Antiporters AT2G47160 56.8 2.0e-218 755.7
HCH4g0416 . 4 634 Antiporters AT2G47160 57.7 2.9e-217 751.9
HCH6g0199 . 1 667 Antiporters AT1G74810 68.2 9.3e-274 939.5
HCH4g0416 . 4 656 Antiporters AT1G74810 66.4 9.4e-258 886.3
HCH6g0432 . 7 645 Antiporters AT1G74810 58.9 5.6e-218 754.2
HCH3g0342 . 7 644 Antiporters AT1G74810 57.8 6.8e-216 747.3
HCH6g0432 . 1 708 Antiporters AT3G62270 82.2 0.0e+00 1171.4
HCH3g0342 . 1 702 Antiporters AT3G62270 75.3 2.3e-307 1051.2
HCH6g0199 . 1 647 Antiporters AT3G62270 58.7 1.0e-222 770.0
HCH4g0416 . 4 634 Antiporters AT3G62270 59.9 1.7e-222 769.2
HCH4g0416 . 1 653 Antiporters AT4G32510 69.4 1.6e-270 928.7
HCH6g0199 . 1 666 Antiporters AT4G32510 66.2 1.2e-262 902.5
HCH6g0432 . 1 646 Antiporters AT4G32510 55.2 1.0e-208 723.4
HCH3g0342 . 1 650 Antiporters AT4G32510 54.9 1.1e-207 719.9
HCH4g0416 . 4 651 Antiporters AT5G25430 70.9 1.0e-269 926.0
HCH6g0199 . 2 655 Antiporters AT5G25430 67.4 1.9e-250 862.1
HCH6g0432 . 7 645 Antiporters AT5G25430 56.4 1.0e-208 723.4
HCH3g0342 . 7 644 Antiporters AT5G25430 55.6 2.6e-204 708.8
HCH4g0540 . 21 586 Antiporters AT5G11800 79.9 1.3e-242 835.9
HCH8g0658 . 14 585 Antiporters AT5G11800 76.2 1.2e-229 792.7
HCH11g1158 . 55 576 Antiporters AT5G11800 69.4 4.1e-193 671.4
HCH11g1158 . 31 574 Antiporters AT5G51710 82.4 3.4e-245 844.3
HCH4g0540 . 50 560 Antiporters AT5G51710 70.0 2.6e-189 658.7
HCH8g0658 . 44 555 Antiporters AT5G51710 69.0 2.8e-183 638.6
HCH8g0658 . 9 582 Antiporters AT2G19600 79.9 9.3e-238 819.7
HCH4g0540 . 33 586 Antiporters AT2G19600 80.3 3.0e-236 814.7
HCH11g1158 . 33 561 Antiporters AT2G19600 68.8 1.8e-185 646.0
HCH4g1859 . 150 565 Antiporters AT1G49810 77.0 1.3e-177 619.4
HCH4g1859 . 1 583 Antiporters AT3G19490 77.2 1.3e-247 852.4
HCH2g1374 . 74 560 Antiporters AT5G12860 90.6 2.5e-253 871.3
HCH11g0980 . 86 568 Antiporters AT5G12860 51.6 5.5e-131 464.9
HCH11g0980 . 1 569 Antiporters AT5G64280 62.9 2.6e-194 675.2
HCH11g0980 . 1 569 Antiporters AT5G64290 68.4 4.9e-212 734.2
HCH7g0137 . 3 379 Antiporters AT4G28390 82.0 2.6e-177 618.2
HCH4g1192 . 96 483 Antiporters AT4G28390 75.9 7.7e-161 563.5
HCH4g1191 . 97 471 Antiporters AT4G28390 74.9 2.4e-154 542.0
HCH3g0135 . 5 303 Antiporters AT4G28390 63.0 2.0e-108 389.4
HCH4g1192 . 94 484 Antiporters AT3G08580 77.2 1.6e-166 582.4
HCH4g1191 . 96 471 Antiporters AT3G08580 76.8 3.0e-160 561.6
HCH7g0137 . 1 378 Antiporters AT3G08580 72.3 1.4e-149 526.2
HCH3g0135 . 7 297 Antiporters AT3G08580 58.6 3.0e-96 349.0
HCH4g1192 . 94 484 Antiporters AT5G13490 82.5 5.8e-180 627.1
HCH4g1191 . 97 471 Antiporters AT5G13490 82.5 4.7e-174 607.4
HCH7g0137 . 1 378 Antiporters AT5G13490 76.9 1.7e-163 572.4
HCH3g0135 . 8 303 Antiporters AT5G13490 62.0 7.2e-106 380.9
HCH3g0135 . 4 301 Antiporters AT5G17400 80.5 3.0e-139 491.5
HCH7g0137 . 79 370 Antiporters AT5G17400 62.7 7.2e-109 390.6
HCH4g1191 . 181 470 Antiporters AT5G17400 62.1 1.5e-106 382.9
HCH4g1192 . 184 473 Antiporters AT5G17400 62.4 1.5e-106 382.9
HCH8g0129 . 84 529 Antiporters AT1G08960 71.0 1.3e-172 603.2
HCH9g1386 . 66 580 Antiporters AT5G17850 56.1 1.5e-152 536.6
HCH6g0491 . 1 529 Antiporters AT2G47600 69.9 1.9e-213 738.8
HCH6g0174 . 1 301 Antiporters AT1G79900 68.9 1.4e-117 419.5
HCH4g1388 . 1 301 Antiporters AT1G79900 68.2 4.5e-116 414.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006357 1 0 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37