Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0986 | ATGGATTGCTGTTTCAATTCTGTCTATTCTCAGGTTGTAGGAGGACGTTCATCATCGAGCTCTGGAAAGGGCCGGGGTAGTCAATGCCCTGCCAGATATGGATTTAGCCTAGTAAAAGGGAAAGCAAATCATCCCATGGAAGATTATCATGTCGCTAAATTTATTACAGTGCGAGGCCATGAGCTCGGCCTTTTTGCTATATATGATGGACATCTGGGAGACAGTGTACCGGCCTATCTACAGAAGCACTTGTTTCCTAATATACTGAAGGATGAGAATTTCTGGTCTAATCCCCAAAGTTCTTTCTTGAACGCTTATGAGAAGACAGACCGGGCGATACTCTCACATAGTCCTGATTTAGGAAGAGGTGGATCCACGGCAGTTACTGCGATTTTAATAAATGGTCAGAAATTATGGGTAGCGAATGTTGGAGATTCACGGGCCGTTCTTTCAAAAAAAGGGCAGGCATTGCAAATGTCTGTTGATCATGAACCAAACACTGAACGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAACGGTCAGCTCGCAGTTTCTCGAGCTTTTGGTGACAAGAACCTCAAAACACACCTGCGATCTGACCCCGACATAAAGAATGCCAATATTAACTCAGACACCGAGCTTCTTATTTTAGCAAGCGATGGTCTATGGAAGGTCATGACAAATCAAGAAGCCGTGGATTTCGCGAGAAGGACCAAGGATCCCCAGAGGGCAGCAAAGCAATTAGCAGCAGAAGCATTGAAAAGGGAAAGCAAGGATGACATATCGATCATTGTAGTTCGTTTCAAAGGGTAA | 846 | 44.68 | MDCCFNSVYSQVVGGRSSSSSGKGRGSQCPARYGFSLVKGKANHPMEDYHVAKFITVRGHELGLFAIYDGHLGDSVPAYLQKHLFPNILKDENFWSNPQSSFLNAYEKTDRAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQALQMSVDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNANINSDTELLILASDGLWKVMTNQEAVDFARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 41408307 | 41412740 | - | evm.model.ptg000004l.395 | HCH11g0986 | 554453 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0986 | 281 | SMART | PP2C_4 | 28 | 277 | IPR001932 | - | |
HCH11g0986 | 281 | Gene3D | - | 28 | 281 | IPR036457 | - | |
HCH11g0986 | 281 | Pfam | Protein phosphatase 2C | 42 | 272 | IPR001932 | - | |
HCH11g0986 | 281 | PANTHER | PROTEIN PHOSPHATASE | 27 | 277 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
HCH11g0986 | 281 | SMART | PP2C_SIG_2 | 43 | 279 | IPR001932 | - | |
HCH11g0986 | 281 | FunFam | Probable protein phosphatase 2C 39 | 24 | 280 | - | - | |
HCH11g0986 | 281 | SUPERFAMILY | PP2C-like | 29 | 280 | IPR036457 | - | |
HCH11g0986 | 281 | CDD | PP2Cc | 32 | 279 | IPR001932 | - | |
HCH11g0986 | 281 | ProSiteProfiles | PPM-type phosphatase domain profile. | 32 | 279 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0986 | HCH-Chr11:41408307 | HCH12g0261 | HCH-Chr12:1447153 | 3.20E-119 | dispersed | |
HCH11g0986 | HCH-Chr11:41408307 | HCH7g0133 | HCH-Chr7:899353 | 6.00E-86 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0986 | K17506 | - | csv:101214223 | 496.893 |