Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0986 ATGGATTGCTGTTTCAATTCTGTCTATTCTCAGGTTGTAGGAGGACGTTCATCATCGAGCTCTGGAAAGGGCCGGGGTAGTCAATGCCCTGCCAGATATGGATTTAGCCTAGTAAAAGGGAAAGCAAATCATCCCATGGAAGATTATCATGTCGCTAAATTTATTACAGTGCGAGGCCATGAGCTCGGCCTTTTTGCTATATATGATGGACATCTGGGAGACAGTGTACCGGCCTATCTACAGAAGCACTTGTTTCCTAATATACTGAAGGATGAGAATTTCTGGTCTAATCCCCAAAGTTCTTTCTTGAACGCTTATGAGAAGACAGACCGGGCGATACTCTCACATAGTCCTGATTTAGGAAGAGGTGGATCCACGGCAGTTACTGCGATTTTAATAAATGGTCAGAAATTATGGGTAGCGAATGTTGGAGATTCACGGGCCGTTCTTTCAAAAAAAGGGCAGGCATTGCAAATGTCTGTTGATCATGAACCAAACACTGAACGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAACGGTCAGCTCGCAGTTTCTCGAGCTTTTGGTGACAAGAACCTCAAAACACACCTGCGATCTGACCCCGACATAAAGAATGCCAATATTAACTCAGACACCGAGCTTCTTATTTTAGCAAGCGATGGTCTATGGAAGGTCATGACAAATCAAGAAGCCGTGGATTTCGCGAGAAGGACCAAGGATCCCCAGAGGGCAGCAAAGCAATTAGCAGCAGAAGCATTGAAAAGGGAAAGCAAGGATGACATATCGATCATTGTAGTTCGTTTCAAAGGGTAA 846 44.68 MDCCFNSVYSQVVGGRSSSSSGKGRGSQCPARYGFSLVKGKANHPMEDYHVAKFITVRGHELGLFAIYDGHLGDSVPAYLQKHLFPNILKDENFWSNPQSSFLNAYEKTDRAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQALQMSVDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNANINSDTELLILASDGLWKVMTNQEAVDFARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41408307 41412740 - evm.model.ptg000004l.395 HCH11g0986 554453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0986 281 SMART PP2C_4 28 277 IPR001932 -
HCH11g0986 281 Gene3D - 28 281 IPR036457 -
HCH11g0986 281 Pfam Protein phosphatase 2C 42 272 IPR001932 -
HCH11g0986 281 PANTHER PROTEIN PHOSPHATASE 27 277 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH11g0986 281 SMART PP2C_SIG_2 43 279 IPR001932 -
HCH11g0986 281 FunFam Probable protein phosphatase 2C 39 24 280 - -
HCH11g0986 281 SUPERFAMILY PP2C-like 29 280 IPR036457 -
HCH11g0986 281 CDD PP2Cc 32 279 IPR001932 -
HCH11g0986 281 ProSiteProfiles PPM-type phosphatase domain profile. 32 279 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0986 HCH-Chr11:41408307 HCH12g0261 HCH-Chr12:1447153 3.20E-119 dispersed
HCH11g0986 HCH-Chr11:41408307 HCH7g0133 HCH-Chr7:899353 6.00E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0986 K17506 - csv:101214223 496.893