Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0997 ATGTCGGCGAAGTTTGATTCTTCGTGTTTTTTGCGGATTGTTTTGGTTTTCGTTTTCGGTTTCGTTTCGCTGCTTTCTGCTAATCCTGAAGGCGATGCCTTGAATGCATTGAAGTCCAATTTACAAGATCCGAACAGTGTTCTGCAGAGTTGGGATCCTACACTTGTTAATCCCTGCACATGGTTCCATGTAACATGTGACAGTATGAATAGTGTCACTCGGGTTGATCTTGGAAATGCAAATCTCTCTGGGACTTTAGTTCCGCAACTTGGTCAACTTCAGAGTTTGCAATACTTGGAGCTTTATAGTAATAATATAAGTGGAGAAATTCCGGAGGAGCTTGGGAATTTGACAAACTTGGTGAGCTTGGACCTTTACATGAACAGGTTAACTGGTCACATACCTGTCACACTTGGCAAGCTTGAAAAGCTACGTTTCCTGCGTCTTAACAACAATAGCTTATGGGGAACTATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCTTGGATCTTTCATACAACAACCTAACTGGAGATATTCCAGTCAATGGTTCTTTCTCTCTTTTTACTCCTATCAGTTTTGGTCATAATAATCTTAATGAAACTGCACGTAGTCTACCTCCTCCTTTACCCCCTCCAGCAACGCCTTCATCAGGTAATAATGCCATGGGAGCTATTGCTGGTGGGGTTGCTGCTGGTGCTGCTTTGCTGTTTGCTGCTCCTGCAATCGCACTTGCTTTGTGGCGTCGGAAGAAACCGCAAGATCACTTCTTTGATGTACCCGCTGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTGCGTGAACTACAAGTTGCCACAGATCATTTTAGCAACAAAAATATTCTAGGTAGAGGTGGATTTGGCAAAGTCTATAAAGGACGCTTGACTGATGGAACTCTAGTGGCAGTTAAGAGGCTTAAAGAGGAGCGTTCCCAGGGTGGGGAGCTGCAATTCCAAACAGAAGTCGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTTCGCCTGCGGGGTTTTTGTATGACACCAACAGAGCGAGTGCTGGTCTATCCCTATATGGTCAATGGAAGTGTAGCATCATGTTTAAGAGAGCGTTCAGAAACACAGCCTCCACTTAGTTGGTTGAATCGAAAACGAATTGCTTTGGGATCTGCAAGGGGGCTTGCTTATTTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAACATTTTACTGGATGAGGAATTTGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAGCTAATGGACTACAAAGATACTCATGTTACAACTGCTGTGCGTGGAACAATTGGGCATATAGCGCCTGAGTACCTTTCGACTGGAAAGTCTTCTGAGAAAACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGGCAGAGGGCCTTTGATCTTGCTCGGCTTGCAAATGACGATGATGTCATGCTTCTGGATTGGGTGAAAGGGCTTCTGAAAGAAAAGAAGTTAGATACACTAGTTGATGCTGATCTTCAGGGTAATTATGTCGATGACGAAGTCGAGCAGCTTATTCAAGTTGCTCTGTTGTGCACGCAAGGCTCTCCTATGGAACGACCTAAGATGTCAGAGGTAGTACGGATGCTCGAAGGCGACGGTTTGGCTGAACGATGGGAAGAATGGCAGAAAGTGGAACCACACCAAGATCTCCACCACAATCTCCACCCACCAAATAATTGGTTGGACGACTCTATTACTAACATTCTTCCCGATGAATTGTCCGGTCCACGATGA 1839 44.15 MSAKFDSSCFLRIVLVFVFGFVSLLSANPEGDALNALKSNLQDPNSVLQSWDPTLVNPCTWFHVTCDSMNSVTRVDLGNANLSGTLVPQLGQLQSLQYLELYSNNISGEIPEELGNLTNLVSLDLYMNRLTGHIPVTLGKLEKLRFLRLNNNSLWGTIPMSLTNVKSLQVLDLSYNNLTGDIPVNGSFSLFTPISFGHNNLNETARSLPPPLPPPATPSSGNNAMGAIAGGVAAGAALLFAAPAIALALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKNILGRGGFGKVYKGRLTDGTLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVNGSVASCLRERSETQPPLSWLNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLDTLVDADLQGNYVDDEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAERWEEWQKVEPHQDLHHNLHPPNNWLDDSITNILPDELSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41508381 41517062 - evm.model.ptg000004l.384 HCH11g0997 554464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0997 612 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0997 612 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
HCH11g0997 612 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0997 612 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
HCH11g0997 612 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
HCH11g0997 612 SUPERFAMILY L domain-like 29 204 - -
HCH11g0997 612 FunFam Somatic embryogenesis receptor kinase 1 26 213 - -
HCH11g0997 612 ProSiteProfiles Leucine-rich repeat profile. 167 189 IPR001611 GO:0005515(InterPro)
HCH11g0997 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 612 - -
HCH11g0997 612 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
HCH11g0997 612 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515(InterPro)
HCH11g0997 612 Pfam Leucine Rich Repeat 95 117 IPR001611 GO:0005515(InterPro)
HCH11g0997 612 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515(InterPro)
HCH11g0997 612 Gene3D Ribonuclease Inhibitor 27 207 IPR032675 -
HCH11g0997 612 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
HCH11g0997 612 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
HCH11g0997 612 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
HCH11g0997 612 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
HCH11g0997 612 SMART serkin_6 290 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0997 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0997 HCH-Chr11:41508381 HCH13g1275 HCH-Chr13:40656402 9.40E-201 dispersed
HCH8g0500 HCH-Chr8:41704090 HCH11g0997 HCH-Chr11:41508381 4.40E-28 dispersed
HCH11g0997 HCH-Chr11:41508381 HCH12g1482 HCH-Chr12:40406051 2.20E-218 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81072 PF00069 Pkinase 6.90E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0997 K13416 - csv:101216389 1004.97