Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0998 ATGATGAAGCTGCAAACATACGCGGGGATTAGTTTCATTGCTACTATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGCCAGTTTTACCCAGCATTGGTTTATTTATCAACTTCCAAGATCAATCTAGTGCTCCTTCTCAACATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACCAAAAAGATATTTCTTGGAACTCTTCGAGAAGCGGAGGTTGAGAGGCTCAATGAGCAATCATGGAAGGAGCTGATGGAAATCCTCTTTGCCATCACTATTTTTCGGCAGGATTTTTCTGTTGCATTCCTTGGTATGGTCACAGCTCTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCAGTGCCCACGTTATCTCATATCCGGATTGTTTCTTTCTTGGGTTTCCTATTTCTTATAGATAGTCTGTTTTTCTACAATTCTTTAGTGTATCTGATACAGACAAGAAAGGCCTCAGTTTCCCTCTTCTTTTCTTTTGAGTATATGATTCTTGCTACAACAGCTGTGTCGACATTTGTGAAATATATTTTCTATGTCAGTGATGTACTCATGGAGGGACAATGGGAAAAGAAGCCTGTCTACACATTTTACTTGGAACTTATCCGAGACTTGCTTCACTTATCTATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCCTTGCACTTAATCCGGGAGCTCTATGAGATATTCAGGAATTTTAGGATTCGTATTGCAGACTATGTTCGGTATAGAAAGATTACTTCAAACATGAATGATCGTTTTCCAGATGCAACACCTGAAGAACTCAATTCAAGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTTGTATGTGGACATCTTTTTCATGTCCATTGTCTTCGATCCTGGTTGGAGCGACAGCATACTTGCCCCACTTGCAGAGCCCTAGTTGTACCACCTGAAGGTACGAGCACAACTGGAGGTCATCATGGAGTGCAGCCTGTTGCTAATCAGCAGGGAACAAGTATCACAAGTGCATCTGCACAAGGTTCAGATGGTACGAATATTGGTGGTGATGCTTTGAGTCGCCATCAGGCTAGGATGCAAGCCGCCATCGCCGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTCCGCAAGCACATTAGTATGGTCTCCTGGACACGTGTTAGTTCCTCGGATTCAAAGGCCTTTGCCTGACTCCACTAATATAGAATTGAATGGAGAACAAGCTTCCAATGGACAGTCACAATATTTTGCATTTGCTGGTGGCTCTTCTAACCCGCTCTTCACTCAATTTCCCCAAAACCTTTTTGTTCCTTTTCAGCCACGTGATGGAGATGCGTTGGGCAACTGTCAAAACGTATCATGTTTTCAGCTAGAAGCTCAAGAAAAATTTCTTCAAGAACAAATAGAGTTCCTGGAGAATCAGCTACAACTTCTCAGAAATTCAGAAGTTGAGGAAAGCACTAGAGCAGGTGATGAGGCAGACAAAGGGAAAAAAGTGGACATAGCATCGTCATCGTCGGTTTCACTTTCAGATTCTCGTTCACATGGAGAAATTGAAGAGACTGTGAGATAA 1653 41.8 MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGTLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPTLSHIRIVSFLGFLFLIDSLFFYNSLVYLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYVRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGTSTTGGHHGVQPVANQQGTSITSASAQGSDGTNIGGDALSRHQARMQAAIAAASIYEKSYVYPSASTLVWSPGHVLVPRIQRPLPDSTNIELNGEQASNGQSQYFAFAGGSSNPLFTQFPQNLFVPFQPRDGDALGNCQNVSCFQLEAQEKFLQEQIEFLENQLQLLRNSEVEESTRAGDEADKGKKVDIASSSSVSLSDSRSHGEIEETVR 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41519920 41524092 - evm.model.ptg000004l.383 HCH11g0998 554465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0998 550 Coils Coil 481 508 - -
HCH11g0998 550 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
HCH11g0998 550 SUPERFAMILY RING/U-box 272 338 - -
HCH11g0998 550 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
HCH11g0998 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
HCH11g0998 550 MobiDBLite consensus disorder prediction 509 550 - -
HCH11g0998 550 MobiDBLite consensus disorder prediction 511 526 - -
HCH11g0998 550 Pfam Ring finger domain 291 330 IPR001841 -
HCH11g0998 550 CDD RING-H2_synoviolin 289 330 - -
HCH11g0998 550 SMART ring_2 292 329 IPR001841 -
HCH11g0998 550 PANTHER RING ZINC FINGER PROTEIN 2 337 IPR050731 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0998 HCH-Chr11:41519920 HCH5g0731 HCH-Chr5:5316687 3.60E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0998 K10601 - csv:101215351 907.901