Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1000 ATGGGCACGAGAACTCAGCAATCATGCCGTGACGAGGAAGAAGATGACCTTCCAAGTGGCCGTGCCGGAACCACGATTTCAGGTCAGTCTGTGTCCATGAGTGGCAGTGTCGGTTCTCCTTCCAGCCGTAGCGAGCAAACCATGGCTACGCCTGCCAGCGACAACACTTTTCTCCGATTAAATAATCTTGATATTCATGGCGACGAGGCCGGTTCGCAAGGACCGACTGCTAATGTGAAGAAAAAGAGAGGTCAAAGAGCTGTTGGAGGGGATAAGAGTGGAAGAGGGCTTCGTCAATTCAGCATGAAAGTGTGCGAGAAAGTGGAGAGTAAGGGAAGAACAACTTACAATGAGGTTGCAGATGAACTTGTAGCAGAGTTTTCCGATCCAGGCAACAGTCTTGCCGCCCCGGATCAGCAACAGTATGATGAAAAAAATATCCGGAGAAGGGTATACGATGCCCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAAAAAGAGATACAATGGAAGGGTCTACCGCGTACCAGTCAGAATGATATTGAAGAATTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAAAAAGCAGCATATTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTTATACAGCGAAATGAACAGTTATACAGCTCTGAGAATTCTCCTAATGGCGGTGTGTATTTACCTTTCATCCTAGTGCAGACACGACCTCATGCAACTGTTGAGATAGAAATATCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTATGTTTTGAAGGCAATGAAATTTTGTGAAAGACCACAATGCGATAATACCGCACAAAATTTTACTCCTGATGGAGGGGAAGGTTCTAGCATGTCAGGCATGTATCAACCCCACATTCCTATTCCTTCAATGTCTAACACGCCTGTTAGAACTCCAACCTCACCGCCGCTCCCTGGAATTATTAAACAACGCATCAAACATGAACATTGA 1041 44.67 MGTRTQQSCRDEEEDDLPSGRAGTTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPGNSLAAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLYSSENSPNGGVYLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQCDNTAQNFTPDGGEGSSMSGMYQPHIPIPSMSNTPVRTPTSPPLPGIIKQRIKHEH 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41538887 41545527 + evm.model.ptg000004l.381 HCH11g1000 554467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1000 346 Coils Coil 191 225 - -
HCH11g1000 346 FunFam Transcription factor-like protein DPB 87 180 - -
HCH11g1000 346 SUPERFAMILY E2F-DP heterodimerization region 182 295 IPR037241 -
HCH11g1000 346 MobiDBLite consensus disorder prediction 319 346 - -
HCH11g1000 346 Gene3D - 88 180 IPR036388 -
HCH11g1000 346 FunFam Transcription factor-like protein DPB 181 306 - -
HCH11g1000 346 Pfam Transcription factor DP 183 289 IPR014889 -
HCH11g1000 346 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
HCH11g1000 346 SMART DP_2 182 344 IPR014889 -
HCH11g1000 346 Gene3D Transcription factor DP 181 304 IPR038168 -
HCH11g1000 346 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH11g1000 346 PANTHER TRANSCRIPTION FACTOR DP 23 315 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
HCH11g1000 346 CDD DP_DD 180 283 IPR014889 -
HCH11g1000 346 PIRSF Txn_factor_DP 3 346 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
HCH11g1000 346 MobiDBLite consensus disorder prediction 22 60 - -
HCH11g1000 346 MobiDBLite consensus disorder prediction 1 95 - -
HCH11g1000 346 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32602 PF08781 DP 1.10E-41 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1000 K04683 - csv:101216863 637.106