Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1000 ATGGGCACGAGAACTCAGCAATCATGCCGTGACGAGGAAGAAGATGACCTTCCAAGTGGCCGTGCCGGAACCACGATTTCAGGTCAGTCTGTGTCCATGAGTGGCAGTGTCGGTTCTCCTTCCAGCCGTAGCGAGCAAACCATGGCTACGCCTGCCAGCGACAACACTTTTCTCCGATTAAATAATCTTGATATTCATGGCGACGAGGCCGGTTCGCAAGGACCGACTGCTAATGTGAAGAAAAAGAGAGGTCAAAGAGCTGTTGGAGGGGATAAGAGTGGAAGAGGGCTTCGTCAATTCAGCATGAAAGTGTGCGAGAAAGTGGAGAGTAAGGGAAGAACAACTTACAATGAGGTTGCAGATGAACTTGTAGCAGAGTTTTCCGATCCAGGCAACAGTCTTGCCGCCCCGGATCAGCAACAGTATGATGAAAAAAATATCCGGAGAAGGGTATACGATGCCCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAAAAAGAGATACAATGGAAGGGTCTACCGCGTACCAGTCAGAATGATATTGAAGAATTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAAAAAGCAGCATATTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTTATACAGCGAAATGAACAGTTATACAGCTCTGAGAATTCTCCTAATGGCGGTGTGTATTTACCTTTCATCCTAGTGCAGACACGACCTCATGCAACTGTTGAGATAGAAATATCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTATGTTTTGAAGGCAATGAAATTTTGTGAAAGACCACAATGCGATAATACCGCACAAAATTTTACTCCTGATGGAGGGGAAGGTTCTAGCATGTCAGGCATGTATCAACCCCACATTCCTATTCCTTCAATGTCTAACACGCCTGTTAGAACTCCAACCTCACCGCCGCTCCCTGGAATTATTAAACAACGCATCAAACATGAACATTGA 1041 44.67 MGTRTQQSCRDEEEDDLPSGRAGTTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPGNSLAAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLYSSENSPNGGVYLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQCDNTAQNFTPDGGEGSSMSGMYQPHIPIPSMSNTPVRTPTSPPLPGIIKQRIKHEH 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41538887 41545527 + evm.model.ptg000004l.381 HCH11g1000 554467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1000 346 Coils Coil 191 225 - -
HCH11g1000 346 FunFam Transcription factor-like protein DPB 87 180 - -
HCH11g1000 346 SUPERFAMILY E2F-DP heterodimerization region 182 295 IPR037241 -
HCH11g1000 346 MobiDBLite consensus disorder prediction 319 346 - -
HCH11g1000 346 Gene3D - 88 180 IPR036388 -
HCH11g1000 346 FunFam Transcription factor-like protein DPB 181 306 - -
HCH11g1000 346 Pfam Transcription factor DP 183 289 IPR014889 -
HCH11g1000 346 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
HCH11g1000 346 SMART DP_2 182 344 IPR014889 -
HCH11g1000 346 Gene3D Transcription factor DP 181 304 IPR038168 -
HCH11g1000 346 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH11g1000 346 PANTHER TRANSCRIPTION FACTOR DP 23 315 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
HCH11g1000 346 CDD DP_DD 180 283 IPR014889 -
HCH11g1000 346 PIRSF Txn_factor_DP 3 346 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
HCH11g1000 346 MobiDBLite consensus disorder prediction 22 60 - -
HCH11g1000 346 MobiDBLite consensus disorder prediction 1 95 - -
HCH11g1000 346 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1000 K04683 - - csv:101216863 637.106
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32602 PF08781 DP 1.10E-41 No_clan HCH TF