Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1035 ATGTTACAAGGGCTATTTCCCGCCGACTTACCCGATCTCTCCGATGGCGATTTTCCCGCCATTTCTCACCTTGAATTCAACTACGGCCCGATCGCGGCCGATCATATCGACGACGCGGTTTTCGGCTCCGACGAGTTTCGGATGTTCGGTTACAAGATTAAACGGTGTCCGAGGACGAGAAGCCATGATTGGACGGAATGTCCGTATGCTCACCGTGGAGAGAAGGCGCAACGCCGGGACCCCCGGAAGTTCAATTATTCGGCGGTCGCCTGCCCGGCGTTCCGGAACGGAAGCTGCCAGAAAGGTGAATTTTGCGAGTTCGCTCACGGCGTATTCGAGTACTGGTTGCACCCGGCCCGGTACCGGACTCGGGCTTGCAATGCCGGTCGATATTGTCAACGAAAAGTCTGTTTCTTTGCTCATACGCCGGAGCAGCTCCGGTCGGAGACAAAATATAAGTACACTTTCAACACTTTCCGACCAGTGAGGATCCCGGTGACAGGCGTCGATCAGGTTGGAGCTATGTCGGATGTCACGTCGATGGCGAGGAAGAAAGAGAATGTTTTCGCCGGAGAAGGGATATCGGAAATTGTAAATAGTTTGAAAGGATTGAAAATGAGGGATATCGGCGGCGACCGGGAAAAGGACCGAAATTTCGGGTCGGACGTTTCGGATTCGGATTTGCCACATATCGGTTGGATATCGGAGTTGGTGCAGTAA 720 53.19 MLQGLFPADLPDLSDGDFPAISHLEFNYGPIAADHIDDAVFGSDEFRMFGYKIKRCPRTRSHDWTECPYAHRGEKAQRRDPRKFNYSAVACPAFRNGSCQKGEFCEFAHGVFEYWLHPARYRTRACNAGRYCQRKVCFFAHTPEQLRSETKYKYTFNTFRPVRIPVTGVDQVGAMSDVTSMARKKENVFAGEGISEIVNSLKGLKMRDIGGDREKDRNFGSDVSDSDLPHIGWISELVQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41892392 41893111 + evm.model.ptg000004l.346 HCH11g1035 554502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1035 239 PANTHER UNKEMPT FAMILY MEMBER 34 148 IPR045234 -
HCH11g1035 239 SMART c3hfinal6 120 143 IPR000571 GO:0046872(InterPro)
HCH11g1035 239 SMART c3hfinal6 85 111 IPR000571 GO:0046872(InterPro)
HCH11g1035 239 Gene3D - 80 156 - -
HCH11g1035 239 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 110 IPR000571 GO:0046872(InterPro)
HCH11g1035 239 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1035 HCH-Chr11:41892392 HCH7g0132 HCH-Chr7:893918 8.90E-46 dispersed
HCH11g1035 HCH-Chr11:41892392 HCH8g0682 HCH-Chr8:43524013 2.30E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32606 PF00642 zf-CCCH 8.90E-05 CL0537 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1035 - - - 0.0