Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1036 ATGCTGAGACGTAAAGACTTCTTTAGAAACTCCAGCTACCAACTAGATGACTCCCTTTCGAGCTCGCTCCAGTGTCGCGCCTGCTCGGCGTCCGGCTTTCCGGCCTTCCACTCCACCCGTTGCCACCCCTCCGGTGATCGCCCGCATTGGGAAGCCTCCGCCGGCTCCTCCTTCCTACCCTCTCATACACCTCAACCCGACCCGTTTACGGTTCCGACCGACCGGCAGTACGGCCCGTTCGGCCGGCTGATCGACCCCAGAAGCCGGTCGGTGCAGCGGTGGAACCGGATGGTGCTGCTGGCTCGCTGGGTGTCACTGGCCGTGGATCCGCTTTTCTTTTACGAGATTTTCCTTAGCAAGGGCGGCGCAAGCCCGAAATGCTTCTTCTACAGAGACACGGCATTCGCCGCCGTGGTCACGGTTATTCGCACGTGCGTGGATATGGTGCATTTGTGGCACGTGTGGATGCAGTTCCGGTTGGCGTATGTTTCGACGGAGTCGTTGGTGGTCGGGTGTGGGAGGCTCGTGTGGGACGCACGTGCGATCGTTTATCACTATGTGAAGTCCATCAAAGGCTTCTGGCTTGATGTGTTTGTCATACTTCCTATACCCCAGGTAGTGACATGGATGGTAGTGCCAAAACTACTGAGAGAAGGAAAGATAGAAGAGATGATGAGAATGCTTTTAATGACATACCTTTTTCAGTTCATTCCAAAGCTTTATCACACCATTTATTTGATGAGAAAGCTCCAAAAAGTCACTGGCTATATCTTTGGCAGCATTTGGTGGCGTTTCAATCTCAATATCTTTGCCTATTTGATTGCATCTCATGTCGCTGGAGGATGCTGGTATCTTCTTGCAACACAACGCCTAATTCAGTGTCTTGAGCAGCAATGTGATAGAAGAAAACTATGCAAAATGGCTTTATCTTGCTCAGGGAAAAGCTGTTACAATTCTGATTACAAGGGGGCTGCATCTTGTGTTGCTAACTTGACAAAGATAAAGTCATTCTGCTTACAAGTTGATGGACTTTTTAGCTATGGAATCTATGAGCCCATGCTTTTGGTTTTCTCCAGTAACTCTCTTGCTGTTAGAACCCTTTATCCTGTTTTCTGGGGTTTATTAAACTTGAGTAGCTTTGGCAATGAACTTGAGCCCACAAGTAACATAGTGGAAGTGATATTCAGTAGTTGCATTACACTTTCTGGATTGGTATTGTTTGTCACATTGATTGGGAATATACAGATTTTCTTGCAAACTATTATGGCAAGTAAGAAGAAGATCCAGATTAGGTTTCGAGATATGCAATGGTGGATGAAGCGGCGACAATTGCCGGTTCATTTGAGGCAACGGGTATACAACTTTGAATATCAGAGGTGGGCAGACATGGGAGGGATGGATGAGAGTGAACTCATTGAAGGGCTGCCTGATGGCCTCAGGAGGGACATCAAACGCTACCTTTGTTTAGACCTTGTTAAGAAGGTGCCTCTATTCCACAAGTTGGATGATCTTATACTTGAAAACATTTGTGATAAAGCTAAACTCCTCTTATTTGGAGAAGGTGAAAAGATAGTGAGAGAGGGAGACCCTGTACAAAGGATGGTGTTTATCGTTCGAGGATGCGTAAAGCGTAGTCAAGGACTTAGCAAAGGTTCGGTGACCACTAGCTGGCTGAACACCGGTGGATTTTTTGGTGACGAGCTACTCTTTTGGTGTCTCCGCCGCCCATTCTTTGACGAGCTTCCAAGTTCTTTGGCGACATTTTCTTGTGTACAACCCGTAGAAGCATATGGCCTTGATGCAGATGATCTTAGACACATTACGGAACACTTTCGGTACAAGTTTGCAAGCGAAAGGATCAAGCGAACGTTGCGCTTTTACTCATCAAGGTGGCGAACATGGGGAGCTTTGATCATTCAATTTTCATGGCGTCGACACCAGATACGAACTCGAGGCTGCGTGACACGAAACAGAAGCACTGAGGATCGGCTAAGGCAGTGTGCTGCAATGATCTTGTCACTGAAGCCACTTGATCATCTCGAATAG 2046 47.51 MLRRKDFFRNSSYQLDDSLSSSLQCRACSASGFPAFHSTRCHPSGDRPHWEASAGSSFLPSHTPQPDPFTVPTDRQYGPFGRLIDPRSRSVQRWNRMVLLARWVSLAVDPLFFYEIFLSKGGASPKCFFYRDTAFAAVVTVIRTCVDMVHLWHVWMQFRLAYVSTESLVVGCGRLVWDARAIVYHYVKSIKGFWLDVFVILPIPQVVTWMVVPKLLREGKIEEMMRMLLMTYLFQFIPKLYHTIYLMRKLQKVTGYIFGSIWWRFNLNIFAYLIASHVAGGCWYLLATQRLIQCLEQQCDRRKLCKMALSCSGKSCYNSDYKGAASCVANLTKIKSFCLQVDGLFSYGIYEPMLLVFSSNSLAVRTLYPVFWGLLNLSSFGNELEPTSNIVEVIFSSCITLSGLVLFVTLIGNIQIFLQTIMASKKKIQIRFRDMQWWMKRRQLPVHLRQRVYNFEYQRWADMGGMDESELIEGLPDGLRRDIKRYLCLDLVKKVPLFHKLDDLILENICDKAKLLLFGEGEKIVREGDPVQRMVFIVRGCVKRSQGLSKGSVTTSWLNTGGFFGDELLFWCLRRPFFDELPSSLATFSCVQPVEAYGLDADDLRHITEHFRYKFASERIKRTLRFYSSRWRTWGALIIQFSWRRHQIRTRGCVTRNRSTEDRLRQCAAMILSLKPLDHLE 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41907522 41914027 + evm.model.ptg000004l.345 HCH11g1036 554503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1036 681 ProSiteProfiles cAMP/cGMP binding motif profile. 497 607 IPR000595 -
HCH11g1036 681 SMART cnmp_10 497 623 IPR000595 -
HCH11g1036 681 SUPERFAMILY Voltage-gated potassium channels 85 425 - -
HCH11g1036 681 Gene3D Helix hairpin bin 423 488 - -
HCH11g1036 681 Pfam Cyclic nucleotide-binding domain 518 609 IPR000595 -
HCH11g1036 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 660 - -
HCH11g1036 681 CDD CAP_ED 497 607 IPR000595 -
HCH11g1036 681 SUPERFAMILY cAMP-binding domain-like 424 611 IPR018490 -
HCH11g1036 681 Gene3D Jelly Rolls 495 613 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1036 HCH-Chr11:41907522 HCH13g0697 HCH-Chr13:5689475 1.90E-234 dispersed
HCH11g1036 HCH-Chr11:41907522 HCH8g0989 HCH-Chr8:45991506 1.80E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1036 K05391 - gmx:100798823 857.44