Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g1045 | ATGACCCAATTGCTAAAACTAGCTTTTGGACTAATTTTAGTTACACTTTTGATAACCCTTTTACTTGTTTTATTTTTCAAACGCCAGAGGCAGGTGAAAAATGAATACAATGATATAGAAAACAAGGAGCAGAAACAGGGGCAAGAGAAGGAAACAGAGGAATTGGTAACTTTTGAAGGTGGTCAAGATTTGACCATTGTTGATGTATTAGAAGCTCCGGGAGAAGTTATTGGGAAATCTAATTATGGAACTTTGTATAAAGCTTATTTGCAGGGAAGTAGTACTGTGAGATTGCTGAGATTTCTTAGGCCAGTTTGTAGTGTTGGATTTGATAATTTTGTGGATGAGGTTGATTTTTTGGGTTGTATCAGGCACCCCAATTTGGTTCCCCTTCTTGGTTTTTATTCAGGTCCAAGAGCTGAGAAGCTTCTCATTCATCCTTTTTACAGGAGAGGAAATTTGGCCCAATTCATTAGAGATGGAAATGGCGATTCACACCGATGGACAGTTATATACAGGATCTCAGTAGGCATAGCCAAAGGGTTGGATCATCTTCACACTGGCCTGAAAAAGGCGATAATCCACGGCAATCTACAATCGAAGAATATCCTTTTGGATCGAAACTACGAACCATATATCTCCGATTTTGGCCTACATCTACTGTTGAATTCCACTTCTGCCCAAGAGGTACTTGAAACTTCAGCAGCTAATGGTTATAAAGCCCCTGAGCTGATCAAAATGAAAGATGCAACTGAGGAAACTGATATCTACAGCTACGGGGTAATCTTACTCGAACTACTTTCCGGGAAGGAACCGATCATTGAAAAGCCAACGCCTGATGAAGATTTTTACTTGCCTAACTTCATGAGGAATGCGGTTCTTGGACATCGAATTGCAGACTTGTTCCATCCGGGAATACTTCTCTGTAGCAGAATTGATGAAAAGCCAGTTGTTACTGAAGAAAATATTCTCAAATACTTTCAGCTTGCTATGGCTTGTTGTTCTCCTTCTCCTGCTCTTAGACCAAGTATGAAGCAAGTGCTCTGGAAGCTCGATGAAATCGGAAAATAA | 1071 | 40.06 | MTQLLKLAFGLILVTLLITLLLVLFFKRQRQVKNEYNDIENKEQKQGQEKETEELVTFEGGQDLTIVDVLEAPGEVIGKSNYGTLYKAYLQGSSTVRLLRFLRPVCSVGFDNFVDEVDFLGCIRHPNLVPLLGFYSGPRAEKLLIHPFYRRGNLAQFIRDGNGDSHRWTVIYRISVGIAKGLDHLHTGLKKAIIHGNLQSKNILLDRNYEPYISDFGLHLLLNSTSAQEVLETSAANGYKAPELIKMKDATEETDIYSYGVILLELLSGKEPIIEKPTPDEDFYLPNFMRNAVLGHRIADLFHPGILLCSRIDEKPVVTEENILKYFQLAMACCSPSPALRPSMKQVLWKLDEIGK | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 42036758 | 42038481 | + | evm.model.ptg000004l.336 | HCH11g1045 | 554512 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g1045 | 356 | Pfam | Protein tyrosine and serine/threonine kinase | 75 | 285 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g1045 | 356 | ProSiteProfiles | Protein kinase domain profile. | 71 | 354 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g1045 | 356 | SUPERFAMILY | Protein kinase-like (PK-like) | 74 | 351 | IPR011009 | - | |
HCH11g1045 | 356 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 356 | - | - | |
HCH11g1045 | 356 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 40 | 355 | IPR052451 | - | |
HCH11g1045 | 356 | Gene3D | Phosphorylase Kinase; domain 1 | 34 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1045 | HCH-Chr11:42036758 | HCH5g0978 | HCH-Chr5:9097866 | 5.30E-55 | dispersed | |
HCH11g1045 | HCH-Chr11:42036758 | HCH5g0668 | HCH-Chr5:4834704 | 2.70E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81073 | PF07714 | PK_Tyr_Ser-Thr | 9.90E-31 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g1045 | - | - | - | 0.0 |