Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1045 ATGACCCAATTGCTAAAACTAGCTTTTGGACTAATTTTAGTTACACTTTTGATAACCCTTTTACTTGTTTTATTTTTCAAACGCCAGAGGCAGGTGAAAAATGAATACAATGATATAGAAAACAAGGAGCAGAAACAGGGGCAAGAGAAGGAAACAGAGGAATTGGTAACTTTTGAAGGTGGTCAAGATTTGACCATTGTTGATGTATTAGAAGCTCCGGGAGAAGTTATTGGGAAATCTAATTATGGAACTTTGTATAAAGCTTATTTGCAGGGAAGTAGTACTGTGAGATTGCTGAGATTTCTTAGGCCAGTTTGTAGTGTTGGATTTGATAATTTTGTGGATGAGGTTGATTTTTTGGGTTGTATCAGGCACCCCAATTTGGTTCCCCTTCTTGGTTTTTATTCAGGTCCAAGAGCTGAGAAGCTTCTCATTCATCCTTTTTACAGGAGAGGAAATTTGGCCCAATTCATTAGAGATGGAAATGGCGATTCACACCGATGGACAGTTATATACAGGATCTCAGTAGGCATAGCCAAAGGGTTGGATCATCTTCACACTGGCCTGAAAAAGGCGATAATCCACGGCAATCTACAATCGAAGAATATCCTTTTGGATCGAAACTACGAACCATATATCTCCGATTTTGGCCTACATCTACTGTTGAATTCCACTTCTGCCCAAGAGGTACTTGAAACTTCAGCAGCTAATGGTTATAAAGCCCCTGAGCTGATCAAAATGAAAGATGCAACTGAGGAAACTGATATCTACAGCTACGGGGTAATCTTACTCGAACTACTTTCCGGGAAGGAACCGATCATTGAAAAGCCAACGCCTGATGAAGATTTTTACTTGCCTAACTTCATGAGGAATGCGGTTCTTGGACATCGAATTGCAGACTTGTTCCATCCGGGAATACTTCTCTGTAGCAGAATTGATGAAAAGCCAGTTGTTACTGAAGAAAATATTCTCAAATACTTTCAGCTTGCTATGGCTTGTTGTTCTCCTTCTCCTGCTCTTAGACCAAGTATGAAGCAAGTGCTCTGGAAGCTCGATGAAATCGGAAAATAA 1071 40.06 MTQLLKLAFGLILVTLLITLLLVLFFKRQRQVKNEYNDIENKEQKQGQEKETEELVTFEGGQDLTIVDVLEAPGEVIGKSNYGTLYKAYLQGSSTVRLLRFLRPVCSVGFDNFVDEVDFLGCIRHPNLVPLLGFYSGPRAEKLLIHPFYRRGNLAQFIRDGNGDSHRWTVIYRISVGIAKGLDHLHTGLKKAIIHGNLQSKNILLDRNYEPYISDFGLHLLLNSTSAQEVLETSAANGYKAPELIKMKDATEETDIYSYGVILLELLSGKEPIIEKPTPDEDFYLPNFMRNAVLGHRIADLFHPGILLCSRIDEKPVVTEENILKYFQLAMACCSPSPALRPSMKQVLWKLDEIGK 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42036758 42038481 + evm.model.ptg000004l.336 HCH11g1045 554512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1045 356 Pfam Protein tyrosine and serine/threonine kinase 75 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g1045 356 ProSiteProfiles Protein kinase domain profile. 71 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g1045 356 SUPERFAMILY Protein kinase-like (PK-like) 74 351 IPR011009 -
HCH11g1045 356 Gene3D Transferase(Phosphotransferase) domain 1 150 356 - -
HCH11g1045 356 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 40 355 IPR052451 -
HCH11g1045 356 Gene3D Phosphorylase Kinase; domain 1 34 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1045 HCH-Chr11:42036758 HCH5g0978 HCH-Chr5:9097866 5.30E-55 dispersed
HCH11g1045 HCH-Chr11:42036758 HCH5g0668 HCH-Chr5:4834704 2.70E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81073 PF07714 PK_Tyr_Ser-Thr 9.90E-31 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1045 - - - 0.0