Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1082 ATGTCCGATTCCAGAGCTCTTCCCGCTCGCGGCGGAGCAGGGATTGTTAAAAGTGTACGTCTGGAGAATTTCATGTGTCATAGTAATTTGTATATTGAGCTTGGAGATTGGGTTAATTTCATTACTGGTCAGAATGGAAGTGGCAAGAGTGCAATATTGACTGCTTTATGTGTTGCATTTGGCTGCCGAGCTAAAGGAACTCAACGGGCGTCTACATTGAAGGAATTTATTAAAACTGGTTGCAGTTGTGCTGTTATTCATGTTGAGTTGAAAAATAATGGGGAGGATGCTTTTAAGCCTGGAATATATGGTGATGCTATAATTATAGAAAGAAGGATTTCCGAAGCCACCAGTGCCATTATTCTGAAGGATTTTCAAGGAAAAAAAGTTGCAAGTCGGAAAGATGAACTTCGGGAGCTGGTAGAACATTTTAATATAGATGTTGAGAATCCATGCGTGATAATGAGTCAGGACAAAAGCAGAGAGTTTCTGCATTCTGGGAATGACAAAGACAAATTTAAGTTCTTCTTCAAGGCTACCCTTCTTCAACAAGTTGAAGATCTCTTGAAAAACATTTTTGAACAATTAAGATCTGCAAATGCACTTGTTGATGACCTGGAGTCTACCATAAGACCTGTGGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAGAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTTCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAACAGCTTCATGAACAAAGCACAAAAATAGGAAAGCTCAAAGATCGGATTCCTATTTGTCGAGCAAAAATTGATTATCAACTGGACCTGGTGGAAAAATTGAGAGAACGCTTTATTGAGAAGAAGACACAAATTGCTAGCATGATGGAGAATACTTCAGAAGTGAGAAGAATGAAGGACGAATTGCAGGAATCTCTTTCCTTGGCAACAAGAGAAAAGCTTGGACTTGAAGAGGAGTACAGCCGCAAAATGAACCACATTCAAAAGATGGTAAATCGTGTCAGGATGCTTGTGCAACAAGTTCATGATATTAATGAGCAGCACATAAAAAATACACAGGCTGAAGAATCTGAAAATGAGGAAAAGTTGAAGGAACTCCAGTTGGAGTCTGATGCTGCTAAATTGACATTAATGAGGTTGAAAGAAGAGGAGAATTCCTTGTTAGATATCCTGTATAAGGGGAAAGATGAAATCAAAAGGATTGCTGAAGAGATTGAAGGTTATATGAAAAAGCATCACGAATGTTCTAACTCTATTCGAGACTTTCGGCAGCATCAAACCAACAAGGTTACAGCTTTTGGAGGTGAGAGAGTCATCCAATTATTACGTGCAATTGAGAGACATCATCATAGATTCAAGAAGCCTCCAATTGGCCCAATTGGTGCCCATGTGAATTTGGTAAACGGTGACATGTGGGCTCCTGCTGTTGAAAATGCCATTGGGAAGTTGCTCAACGCTTTCATTGTGACTGATCATCGAGATTCTCTTACTTTAAGAGGATGTGCAAATGAAGCTAATTATAGGCATCTATCAATTATCATCTATGACTTTTCAAGACCAATGTTAAAAATTCCATCTCACATGCTTCCTCAAACAAAGCACCCAACCACCTTTTCACTTATTCAATCTGAAAACCATACTATCATGAATGTTCTAATAGATCGGGGTGATGCTGAGAGGCAAGTGATTGTTAAAGATTATGATGCGGGTAAAGCAGTTGCATTTGAGCAACGAATTTCGAACATTAAGGAGGTTCACACTTTAGATGGATATAAAATGTTTTCTCGTGGTACTGTTCAGACAATTCTCCCTCCCGTTAAAAGACCTAGAAGTGGCCGACTCTGTAGTTCTTTTGATGATCAAATTAAAAGTCTTGAAAAAGATGCTTTGAATATGAAAAAAGAAGCTGAACAGTGTCAGAGGAGAAAGAGAGATTCAGAAGAACAACTCCGGGATCTTGAAGAGAACCTAAACAATGTGAAGAGGAGGCGTCTAAATGCGGAACGTGTTTTAGTATCCAAAAATTTTGAGGTGCAAGATTTCAGGAATTCACAAATTGCTGAAAGTAGTTCATTACCTTCATCAAATGTCGATGAACTTCATCAAGAAATTTCAAAAATCCAAGAGGAGATGCAAGAGAAGGAGATACTGCTGGAAAAGGTTAGAGTTAGAATGAAAGAAGCAGAAGTGAAGGCAAAGGATCTTAAACTATCATTTGAGAATCTCTGTGAGTCGGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAATAATCTGTTGCAGATTGAACGAGATATGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGCATTATGACTAACAAGGTCTTCTTTGATATCAAGGAGGCAGAGAAAAAATATCAGGAGCTTGAGCACCACCGCAAGGAGAGTTATAGTAAAGCTTCAATAATTTGTCCTGAGAGTGAAATTGAGGCTTTAGGGAATTGGGATGGGAGCACTCCTGAACAACTTAGTGCTCATTTAACTAGGCTAAATCAGAGACTTCATAATGAGAGTCGGAGATATTCAGAATCTCTAGAAGACCTGAGAATGATGTATGAGAAAAAAGAACGTACAATTATTAGAAAACAACAAACTTACAAAAGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAGGCTCTAGAGCTACGGTGGAGCAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGTCATTTAAGGAAAAAAGGAATCAGTGGACACATAAAAGTTAATTACGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCACAAGATGCATCTAGCAGTTCTGTTCGTGATACTCGTGGACTTTCAGGTGGAGAACGGTCATTTTCAACTCTGTGCTTTGCTTTGGCACTGCACGAGATGACAGAAGCCACATTCCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTAGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCTTTGGCTCAAGGTTCCCAATGGATATTTATTACTCCTCATGATATAAGCATGGTAAAATATGGAGAGCGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 39.06 MSDSRALPARGGAGIVKSVRLENFMCHSNLYIELGDWVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKEFIKTGCSCAVIHVELKNNGEDAFKPGIYGDAIIIERRISEATSAIILKDFQGKKVASRKDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVEDLLKNIFEQLRSANALVDDLESTIRPVEKELNELRGKIRNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLHEQSTKIGKLKDRIPICRAKIDYQLDLVEKLRERFIEKKTQIASMMENTSEVRRMKDELQESLSLATREKLGLEEEYSRKMNHIQKMVNRVRMLVQQVHDINEQHIKNTQAEESENEEKLKELQLESDAAKLTLMRLKEEENSLLDILYKGKDEIKRIAEEIEGYMKKHHECSNSIRDFRQHQTNKVTAFGGERVIQLLRAIERHHHRFKKPPIGPIGAHVNLVNGDMWAPAVENAIGKLLNAFIVTDHRDSLTLRGCANEANYRHLSIIIYDFSRPMLKIPSHMLPQTKHPTTFSLIQSENHTIMNVLIDRGDAERQVIVKDYDAGKAVAFEQRISNIKEVHTLDGYKMFSRGTVQTILPPVKRPRSGRLCSSFDDQIKSLEKDALNMKKEAEQCQRRKRDSEEQLRDLEENLNNVKRRRLNAERVLVSKNFEVQDFRNSQIAESSSLPSSNVDELHQEISKIQEEMQEKEILLEKVRVRMKEAEVKAKDLKLSFENLCESAKGEIDAFEEAENNLLQIERDMHSAEKEKDHYEGIMTNKVFFDIKEAEKKYQELEHHRKESYSKASIICPESEIEALGNWDGSTPEQLSAHLTRLNQRLHNESRRYSESLEDLRMMYEKKERTIIRKQQTYKSFREKLNACQKALELRWSKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEATFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDISMVKYGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42298066 42314861 + evm.model.ptg000004l.299 HCH11g1082 554549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1082 1052 Coils Coil 710 786 - -
HCH11g1082 1052 Coils Coil 182 223 - -
HCH11g1082 1052 Coils Coil 868 888 - -
HCH11g1082 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1050 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
HCH11g1082 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 1042 IPR027417 -
HCH11g1082 1052 Pfam RecF/RecN/SMC N terminal domain 16 1042 IPR003395 -
HCH11g1082 1052 Coils Coil 312 332 - -
HCH11g1082 1052 Coils Coil 628 683 - -
HCH11g1082 1052 Coils Coil 284 304 - -
HCH11g1082 1052 Coils Coil 802 822 - -
HCH11g1082 1052 Coils Coil 362 396 - -
HCH11g1082 1052 Gene3D - 739 1047 IPR027417 -
HCH11g1082 1052 SUPERFAMILY Smc hinge domain 430 612 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
HCH11g1082 1052 Gene3D - 15 214 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1082 K22804 - csv:101208493 1771.52