Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1082 ATGTCCGATTCCAGAGCTCTTCCCGCTCGCGGCGGAGCAGGGATTGTTAAAAGTGTACGTCTGGAGAATTTCATGTGTCATAGTAATTTGTATATTGAGCTTGGAGATTGGGTTAATTTCATTACTGGTCAGAATGGAAGTGGCAAGAGTGCAATATTGACTGCTTTATGTGTTGCATTTGGCTGCCGAGCTAAAGGAACTCAACGGGCGTCTACATTGAAGGAATTTATTAAAACTGGTTGCAGTTGTGCTGTTATTCATGTTGAGTTGAAAAATAATGGGGAGGATGCTTTTAAGCCTGGAATATATGGTGATGCTATAATTATAGAAAGAAGGATTTCCGAAGCCACCAGTGCCATTATTCTGAAGGATTTTCAAGGAAAAAAAGTTGCAAGTCGGAAAGATGAACTTCGGGAGCTGGTAGAACATTTTAATATAGATGTTGAGAATCCATGCGTGATAATGAGTCAGGACAAAAGCAGAGAGTTTCTGCATTCTGGGAATGACAAAGACAAATTTAAGTTCTTCTTCAAGGCTACCCTTCTTCAACAAGTTGAAGATCTCTTGAAAAACATTTTTGAACAATTAAGATCTGCAAATGCACTTGTTGATGACCTGGAGTCTACCATAAGACCTGTGGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAGAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTTCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAACAGCTTCATGAACAAAGCACAAAAATAGGAAAGCTCAAAGATCGGATTCCTATTTGTCGAGCAAAAATTGATTATCAACTGGACCTGGTGGAAAAATTGAGAGAACGCTTTATTGAGAAGAAGACACAAATTGCTAGCATGATGGAGAATACTTCAGAAGTGAGAAGAATGAAGGACGAATTGCAGGAATCTCTTTCCTTGGCAACAAGAGAAAAGCTTGGACTTGAAGAGGAGTACAGCCGCAAAATGAACCACATTCAAAAGATGGTAAATCGTGTCAGGATGCTTGTGCAACAAGTTCATGATATTAATGAGCAGCACATAAAAAATACACAGGCTGAAGAATCTGAAAATGAGGAAAAGTTGAAGGAACTCCAGTTGGAGTCTGATGCTGCTAAATTGACATTAATGAGGTTGAAAGAAGAGGAGAATTCCTTGTTAGATATCCTGTATAAGGGGAAAGATGAAATCAAAAGGATTGCTGAAGAGATTGAAGGTTATATGAAAAAGCATCACGAATGTTCTAACTCTATTCGAGACTTTCGGCAGCATCAAACCAACAAGGTTACAGCTTTTGGAGGTGAGAGAGTCATCCAATTATTACGTGCAATTGAGAGACATCATCATAGATTCAAGAAGCCTCCAATTGGCCCAATTGGTGCCCATGTGAATTTGGTAAACGGTGACATGTGGGCTCCTGCTGTTGAAAATGCCATTGGGAAGTTGCTCAACGCTTTCATTGTGACTGATCATCGAGATTCTCTTACTTTAAGAGGATGTGCAAATGAAGCTAATTATAGGCATCTATCAATTATCATCTATGACTTTTCAAGACCAATGTTAAAAATTCCATCTCACATGCTTCCTCAAACAAAGCACCCAACCACCTTTTCACTTATTCAATCTGAAAACCATACTATCATGAATGTTCTAATAGATCGGGGTGATGCTGAGAGGCAAGTGATTGTTAAAGATTATGATGCGGGTAAAGCAGTTGCATTTGAGCAACGAATTTCGAACATTAAGGAGGTTCACACTTTAGATGGATATAAAATGTTTTCTCGTGGTACTGTTCAGACAATTCTCCCTCCCGTTAAAAGACCTAGAAGTGGCCGACTCTGTAGTTCTTTTGATGATCAAATTAAAAGTCTTGAAAAAGATGCTTTGAATATGAAAAAAGAAGCTGAACAGTGTCAGAGGAGAAAGAGAGATTCAGAAGAACAACTCCGGGATCTTGAAGAGAACCTAAACAATGTGAAGAGGAGGCGTCTAAATGCGGAACGTGTTTTAGTATCCAAAAATTTTGAGGTGCAAGATTTCAGGAATTCACAAATTGCTGAAAGTAGTTCATTACCTTCATCAAATGTCGATGAACTTCATCAAGAAATTTCAAAAATCCAAGAGGAGATGCAAGAGAAGGAGATACTGCTGGAAAAGGTTAGAGTTAGAATGAAAGAAGCAGAAGTGAAGGCAAAGGATCTTAAACTATCATTTGAGAATCTCTGTGAGTCGGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAATAATCTGTTGCAGATTGAACGAGATATGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGCATTATGACTAACAAGGTCTTCTTTGATATCAAGGAGGCAGAGAAAAAATATCAGGAGCTTGAGCACCACCGCAAGGAGAGTTATAGTAAAGCTTCAATAATTTGTCCTGAGAGTGAAATTGAGGCTTTAGGGAATTGGGATGGGAGCACTCCTGAACAACTTAGTGCTCATTTAACTAGGCTAAATCAGAGACTTCATAATGAGAGTCGGAGATATTCAGAATCTCTAGAAGACCTGAGAATGATGTATGAGAAAAAAGAACGTACAATTATTAGAAAACAACAAACTTACAAAAGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAGGCTCTAGAGCTACGGTGGAGCAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGTCATTTAAGGAAAAAAGGAATCAGTGGACACATAAAAGTTAATTACGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCACAAGATGCATCTAGCAGTTCTGTTCGTGATACTCGTGGACTTTCAGGTGGAGAACGGTCATTTTCAACTCTGTGCTTTGCTTTGGCACTGCACGAGATGACAGAAGCCACATTCCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTAGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCTTTGGCTCAAGGTTCCCAATGGATATTTATTACTCCTCATGATATAAGCATGGTAAAATATGGAGAGCGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 39.06 MSDSRALPARGGAGIVKSVRLENFMCHSNLYIELGDWVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKEFIKTGCSCAVIHVELKNNGEDAFKPGIYGDAIIIERRISEATSAIILKDFQGKKVASRKDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVEDLLKNIFEQLRSANALVDDLESTIRPVEKELNELRGKIRNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLHEQSTKIGKLKDRIPICRAKIDYQLDLVEKLRERFIEKKTQIASMMENTSEVRRMKDELQESLSLATREKLGLEEEYSRKMNHIQKMVNRVRMLVQQVHDINEQHIKNTQAEESENEEKLKELQLESDAAKLTLMRLKEEENSLLDILYKGKDEIKRIAEEIEGYMKKHHECSNSIRDFRQHQTNKVTAFGGERVIQLLRAIERHHHRFKKPPIGPIGAHVNLVNGDMWAPAVENAIGKLLNAFIVTDHRDSLTLRGCANEANYRHLSIIIYDFSRPMLKIPSHMLPQTKHPTTFSLIQSENHTIMNVLIDRGDAERQVIVKDYDAGKAVAFEQRISNIKEVHTLDGYKMFSRGTVQTILPPVKRPRSGRLCSSFDDQIKSLEKDALNMKKEAEQCQRRKRDSEEQLRDLEENLNNVKRRRLNAERVLVSKNFEVQDFRNSQIAESSSLPSSNVDELHQEISKIQEEMQEKEILLEKVRVRMKEAEVKAKDLKLSFENLCESAKGEIDAFEEAENNLLQIERDMHSAEKEKDHYEGIMTNKVFFDIKEAEKKYQELEHHRKESYSKASIICPESEIEALGNWDGSTPEQLSAHLTRLNQRLHNESRRYSESLEDLRMMYEKKERTIIRKQQTYKSFREKLNACQKALELRWSKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEATFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDISMVKYGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42298066 42314861 + evm.model.ptg000004l.299 HCH11g1082 554549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1082 1052 Coils Coil 710 786 - -
HCH11g1082 1052 Coils Coil 182 223 - -
HCH11g1082 1052 Coils Coil 868 888 - -
HCH11g1082 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1050 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
HCH11g1082 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 1042 IPR027417 -
HCH11g1082 1052 Pfam RecF/RecN/SMC N terminal domain 16 1042 IPR003395 -
HCH11g1082 1052 Coils Coil 312 332 - -
HCH11g1082 1052 Coils Coil 628 683 - -
HCH11g1082 1052 Coils Coil 284 304 - -
HCH11g1082 1052 Coils Coil 802 822 - -
HCH11g1082 1052 Coils Coil 362 396 - -
HCH11g1082 1052 Gene3D - 739 1047 IPR027417 -
HCH11g1082 1052 SUPERFAMILY Smc hinge domain 430 612 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
HCH11g1082 1052 Gene3D - 15 214 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1082 K22804 - - csv:101208493 1771.52
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1149 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 67.9 0.0e+00 1339.3
HCH11g1082 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 61.7 0.0e+00 1214.1
HCH11g1082 . 10 1052 Structural Maintenance of Chromosomes family AT5G61460 65.2 0.0e+00 1307.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32