Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1124 ATGGAGAGAAATCTTGGGGTTTTGTTATTTTTCCAATTCTTTTTACTCTTTTCTCCATCTTTATCTAAACATGATTCCAATGGCATAGATTGGTGGTGTAACAAAACCCCTTATCCTGAACCATGCAAATATTTCTCCCAACAAGGCTATGCTCCCAAGCACATGTCTGAGTTCAAGAAAATGGTGCTCCGAATCACCATGGAAAGAGCTCGAAGTGCAGAAAGCCATGCCAAAGGTGTCGGTTCGAGGTGCCGAAATGAGAAGGAAAAGGCTGCTTGGGCTGATTGTATGGTGCTCTTCCAAAACACCATTCTGCAACTCAACAACACTTTAGATTCCACCACAAAATGCACTGAGTTTGATATCCAAACCTGGCTCAGCACTGCCCTAACAAACCTCGAAACTTGTCGCGCCGGGTTCACAGAGCTTAACGTTTCGGACTATGTGTTGCCGCAAATCATGTCTAACAATGTCACAAAGTTGATAAGCAACAGTTTGGCAATTAACAATGCTTCAACTCAACCGGGGAAAGAGACATACAAAGAGGGTTTTCCAAGCTGGATTTCACCTGGTAACAGGAGGCTATTGCAAGCATCTTCAATAAAGGCAGACCTTGTGGTGGCTCAGGATGGATCTGGTGACTTTAAGACGGTCGAAGCGGCTCTAGAGGCAGCGGCGAAAAGGGAGAAAGATGGGAGATTTGTTATACATGTAAAGAGAGGGATTTACACAGAGAATCTTGTGATAGGGAATAAGATGAAGAATATAATGCTTGTAGGTGATGGGATGAGGTTTACTATCATTACTGGTAGTAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCAACTGTTGCGGTGACTGGTGAAGGTTTCATAGCTCAAGGCATCACATTCCGAAACACAGCCGGTCCCGAAAACCATCAAGCAGTCGCTCTCCGATCAGGCGCCGACCTCTCTGTCTTCTACCGCTGCGGCTTCGAAGGGTACCAAGATACTCTCTACGTCCATTCACAAAGACAATTCTACAAGGAGTGTTACATTTACGGAACAGTAGATTTCATATTTGGCAATGCAGCAGTTGTTCTACAAAACTGCATGATCTATGCTAGAAAGCCAATGAATGGACAAAAAAATGCTATCACAGCTCAAGGACGAACCGATCCAAACCAAAACACGGGCATCTCGATCCATAACTCACGAGTCATGGCAACAGATGACCTTAAACCAGTACAGAATACAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTACTCCCGGACGGTTTTTACGCGAACTTATATCGATAACTTGGTCGATCCAGCAGGTTGGTTGGAATGGGATGGTGATTTTGCTTTGAATACATTGTTTTATGGAGAATATAACAACATTGGTCCTGGTTCATCAACAAGCCAAAGAGTGAAGTGGAAAGGTTATCATGTTATAACTAGTTCAATTGAGGCATCAAAGTTTAGTGTGCAGAATTTCATTGAAGGCCAATCATGGTTGCCTGCCACTGGAGTTCCATTTCATTCTGGGATCTGA 1551 43.78 MERNLGVLLFFQFFLLFSPSLSKHDSNGIDWWCNKTPYPEPCKYFSQQGYAPKHMSEFKKMVLRITMERARSAESHAKGVGSRCRNEKEKAAWADCMVLFQNTILQLNNTLDSTTKCTEFDIQTWLSTALTNLETCRAGFTELNVSDYVLPQIMSNNVTKLISNSLAINNASTQPGKETYKEGFPSWISPGNRRLLQASSIKADLVVAQDGSGDFKTVEAALEAAAKREKDGRFVIHVKRGIYTENLVIGNKMKNIMLVGDGMRFTIITGSRSVGGGSTTFNSATVAVTGEGFIAQGITFRNTAGPENHQAVALRSGADLSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMNGQKNAITAQGRTDPNQNTGISIHNSRVMATDDLKPVQNTVKTYLGRPWKEYSRTVFTRTYIDNLVDPAGWLEWDGDFALNTLFYGEYNNIGPGSSTSQRVKWKGYHVITSSIEASKFSVQNFIEGQSWLPATGVPFHSGI 516
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 42991513 42993271 - evm.model.ptg000004l.257 HCH11g1124 554591
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1124 516 CDD PMEI-like_3 31 171 - -
HCH11g1124 516 Pfam Plant invertase/pectin methylesterase inhibitor 29 168 IPR006501 GO:0004857(InterPro)
HCH11g1124 516 PANTHER PECTINESTERASE 19 507 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH11g1124 516 NCBIfam pectinesterase inhibitor domain 1 170 IPR006501 GO:0004857(InterPro)
HCH11g1124 516 SUPERFAMILY Pectin lyase-like 200 515 IPR011050 -
HCH11g1124 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 171 IPR035513 -
HCH11g1124 516 Gene3D - 198 516 IPR012334 -
HCH11g1124 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
HCH11g1124 516 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
HCH11g1124 516 SMART PMEI_2 24 168 IPR006501 GO:0004857(InterPro)
HCH11g1124 516 FunFam Pectinesterase 198 516 - -
HCH11g1124 516 Pfam Pectinesterase 204 501 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1124 HCH-Chr11:42991513 HCH4g1042 HCH-Chr4:6698670 2.70E-124 dispersed
HCH11g1124 HCH-Chr11:42991513 HCH11g1125 HCH-Chr11:42996005 4.70E-169 tandem
HCH10g0771 HCH-Chr10:7476523 HCH11g1124 HCH-Chr11:42991513 7.30E-89 transposed
HCH10g1341 HCH-Chr10:45972961 HCH11g1124 HCH-Chr11:42991513 8.40E-137 transposed
HCH14g0833 HCH-Chr14:36237854 HCH11g1124 HCH-Chr11:42991513 3.10E-126 transposed
HCH11g1124 HCH-Chr11:42991513 HCH5g0736 HCH-Chr5:5353497 1.40E-218 wgd
HCH11g1124 HCH-Chr11:42991513 HCH7g1526 HCH-Chr7:47791557 2.00E-167 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1124 K01051 - csv:101211449 837.025