Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH11g1124 | ATGGAGAGAAATCTTGGGGTTTTGTTATTTTTCCAATTCTTTTTACTCTTTTCTCCATCTTTATCTAAACATGATTCCAATGGCATAGATTGGTGGTGTAACAAAACCCCTTATCCTGAACCATGCAAATATTTCTCCCAACAAGGCTATGCTCCCAAGCACATGTCTGAGTTCAAGAAAATGGTGCTCCGAATCACCATGGAAAGAGCTCGAAGTGCAGAAAGCCATGCCAAAGGTGTCGGTTCGAGGTGCCGAAATGAGAAGGAAAAGGCTGCTTGGGCTGATTGTATGGTGCTCTTCCAAAACACCATTCTGCAACTCAACAACACTTTAGATTCCACCACAAAATGCACTGAGTTTGATATCCAAACCTGGCTCAGCACTGCCCTAACAAACCTCGAAACTTGTCGCGCCGGGTTCACAGAGCTTAACGTTTCGGACTATGTGTTGCCGCAAATCATGTCTAACAATGTCACAAAGTTGATAAGCAACAGTTTGGCAATTAACAATGCTTCAACTCAACCGGGGAAAGAGACATACAAAGAGGGTTTTCCAAGCTGGATTTCACCTGGTAACAGGAGGCTATTGCAAGCATCTTCAATAAAGGCAGACCTTGTGGTGGCTCAGGATGGATCTGGTGACTTTAAGACGGTCGAAGCGGCTCTAGAGGCAGCGGCGAAAAGGGAGAAAGATGGGAGATTTGTTATACATGTAAAGAGAGGGATTTACACAGAGAATCTTGTGATAGGGAATAAGATGAAGAATATAATGCTTGTAGGTGATGGGATGAGGTTTACTATCATTACTGGTAGTAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCAACTGTTGCGGTGACTGGTGAAGGTTTCATAGCTCAAGGCATCACATTCCGAAACACAGCCGGTCCCGAAAACCATCAAGCAGTCGCTCTCCGATCAGGCGCCGACCTCTCTGTCTTCTACCGCTGCGGCTTCGAAGGGTACCAAGATACTCTCTACGTCCATTCACAAAGACAATTCTACAAGGAGTGTTACATTTACGGAACAGTAGATTTCATATTTGGCAATGCAGCAGTTGTTCTACAAAACTGCATGATCTATGCTAGAAAGCCAATGAATGGACAAAAAAATGCTATCACAGCTCAAGGACGAACCGATCCAAACCAAAACACGGGCATCTCGATCCATAACTCACGAGTCATGGCAACAGATGACCTTAAACCAGTACAGAATACAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTACTCCCGGACGGTTTTTACGCGAACTTATATCGATAACTTGGTCGATCCAGCAGGTTGGTTGGAATGGGATGGTGATTTTGCTTTGAATACATTGTTTTATGGAGAATATAACAACATTGGTCCTGGTTCATCAACAAGCCAAAGAGTGAAGTGGAAAGGTTATCATGTTATAACTAGTTCAATTGAGGCATCAAAGTTTAGTGTGCAGAATTTCATTGAAGGCCAATCATGGTTGCCTGCCACTGGAGTTCCATTTCATTCTGGGATCTGA | 1551 | 43.78 | MERNLGVLLFFQFFLLFSPSLSKHDSNGIDWWCNKTPYPEPCKYFSQQGYAPKHMSEFKKMVLRITMERARSAESHAKGVGSRCRNEKEKAAWADCMVLFQNTILQLNNTLDSTTKCTEFDIQTWLSTALTNLETCRAGFTELNVSDYVLPQIMSNNVTKLISNSLAINNASTQPGKETYKEGFPSWISPGNRRLLQASSIKADLVVAQDGSGDFKTVEAALEAAAKREKDGRFVIHVKRGIYTENLVIGNKMKNIMLVGDGMRFTIITGSRSVGGGSTTFNSATVAVTGEGFIAQGITFRNTAGPENHQAVALRSGADLSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMNGQKNAITAQGRTDPNQNTGISIHNSRVMATDDLKPVQNTVKTYLGRPWKEYSRTVFTRTYIDNLVDPAGWLEWDGDFALNTLFYGEYNNIGPGSSTSQRVKWKGYHVITSSIEASKFSVQNFIEGQSWLPATGVPFHSGI | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 42991513 | 42993271 | - | evm.model.ptg000004l.257 | HCH11g1124 | 554591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH11g1124 | 516 | CDD | PMEI-like_3 | 31 | 171 | - | - | |
| HCH11g1124 | 516 | Pfam | Plant invertase/pectin methylesterase inhibitor | 29 | 168 | IPR006501 | GO:0004857(InterPro) | |
| HCH11g1124 | 516 | PANTHER | PECTINESTERASE | 19 | 507 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| HCH11g1124 | 516 | NCBIfam | pectinesterase inhibitor domain | 1 | 170 | IPR006501 | GO:0004857(InterPro) | |
| HCH11g1124 | 516 | SUPERFAMILY | Pectin lyase-like | 200 | 515 | IPR011050 | - | |
| HCH11g1124 | 516 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 27 | 171 | IPR035513 | - | |
| HCH11g1124 | 516 | Gene3D | - | 198 | 516 | IPR012334 | - | |
| HCH11g1124 | 516 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 23 | 171 | IPR035513 | - | |
| HCH11g1124 | 516 | ProSitePatterns | Pectinesterase signature 2. | 349 | 358 | IPR033131 | - | |
| HCH11g1124 | 516 | SMART | PMEI_2 | 24 | 168 | IPR006501 | GO:0004857(InterPro) | |
| HCH11g1124 | 516 | FunFam | Pectinesterase | 198 | 516 | - | - | |
| HCH11g1124 | 516 | Pfam | Pectinesterase | 204 | 501 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g1124 | HCH-Chr11:42991513 | HCH4g1042 | HCH-Chr4:6698670 | 2.70E-124 | dispersed | |
| HCH11g1124 | HCH-Chr11:42991513 | HCH11g1125 | HCH-Chr11:42996005 | 4.70E-169 | tandem | |
| HCH10g0771 | HCH-Chr10:7476523 | HCH11g1124 | HCH-Chr11:42991513 | 7.30E-89 | transposed | |
| HCH10g1341 | HCH-Chr10:45972961 | HCH11g1124 | HCH-Chr11:42991513 | 8.40E-137 | transposed | |
| HCH14g0833 | HCH-Chr14:36237854 | HCH11g1124 | HCH-Chr11:42991513 | 3.10E-126 | transposed | |
| HCH11g1124 | HCH-Chr11:42991513 | HCH5g0736 | HCH-Chr5:5353497 | 1.40E-218 | wgd | |
| HCH11g1124 | HCH-Chr11:42991513 | HCH7g1526 | HCH-Chr7:47791557 | 2.00E-167 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH11g1124 | K01051 | - | csv:101211449 | 837.025 |