Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1125 ATGGCCATGAAAACCAAATTCAGATTAGTTTTCATGGCTCTTTTCTCAATTCTCTCCAAAGCCTCATCGGAAACTAATTCCACCACTTCCGGCACCGGTAATAGCATGGAATGGTGGTGCCGTACAACACCACATCCAGAAGCATGCATGTTTTTCATGTCACAAACCAACAATCCCCGAAAACCCGTACCGGGAAACTTATCGGAGTTTCGAAAAATGTCGGTCAGAACCGCCATGGAAAACGCTGTTAAAGCTCGAAATTACGCTACTGAATTCGGTCGGAGCTGCCGAAACCGGCGAGAAAAAGCCGCCTGGTTCGACTGCTTGAAACTCTACGATGACACCGTGATTCAGCTTAACCGAACCCTAACCGGCCTCGGCGGTAATGGCAGCCGGTGTACAGACTTCGACGCCCAGACGTGGCTGAGCTCCGCCCTGACGAATATCGACATGTGTCGGTCTGGAGCAACTGATCTCAACGTCACTGATTTCATTGAGCCGATCACGTCCGGGCCCAGCCGGAACATGTCGGAGCTGATAAGCAATTGTTTGGCCATCAATGGAGGTTTCTTAGAAGGAGGAAGGAACAATACTAACAGTACAGACCCGGCGGAAGAAATGGGGTTTCCGAGATGGGTTTTGAAAAGTGATAGGAAACTGCTGCAGTCGTCGAAAGTGAAGGCTGATATGGTGGTGGCGAAAGATGGGTCAGGGAATTTTCGGACGGTTCAGGCGGCGGTGAACGCGGCGGCGAGGAGGCGGAGGAAAAGTAGAATAGTGATATACGTAAAGAGAGGGGTATATAGAGAGAATATAGAAGTGGGAAGTGAAAATAGTAATATAATGCTTGTTGGTGATGGAATGAGATTTACATTCATTACAAGTGGAAGAAGTGTTGCTGCTGGATTCACCACCTTTAGCTCTGCAACTGCTGGCATCGATGGACTAGCCTTCATTGCACGAGACATAAGCTTCATCAACTCCGCCGGCCCTCGGATGGGCCAAGCCGTCGCACTCCGATCATCTTCCGACCTCTCGGTGTTCCACCGCTGCGCGTTCCAAGGATACCAAGACACCCTACTAGTTCTCTCACAACGACAATTCTACAAGCAATGTTACATCTATGGAACAATCGACTTCATCTTTGGCAATGCCGCAGTGGTTTTCCAAAACTGCATGATTTACGTCAGAAGACCCTTAAAGGGCCAAGTGAATGTCATCACGGCCCAAGGCCGAGAAGACCCATATCAAAACACGGGAATCTCGATCCACAACTCTCAAATACGGGCCGCTCCTGATTTAAGGCCCATAATTGGTTCTGTGAAAACGTATTTGGGCCGGCCTTGGAAGAAGTATTCTCGGACTGTGATTATGAGAAGCTATATTGATACCTTAGTTAGCCCAGTGGGCTGGTTAGCATGGCAGAAAAGTAAATTTGCTCAAGATACTTTGTTTTATGGAGAATATAAGAATTTTGGGCCTCGGGCCTCGACCCGGTCCAGAGTTAGATGGGCCGGTTTTCATGTTATAACAAGCCCAAATGTCGCCTCCCGTTTCACTGTCGGTAAACTCATCGCGGGCCAAACGTGGTTGCCGGCCACCGGAGTGCCCTTCACGCTTGGCCTTTGA 1629 49.11 MAMKTKFRLVFMALFSILSKASSETNSTTSGTGNSMEWWCRTTPHPEACMFFMSQTNNPRKPVPGNLSEFRKMSVRTAMENAVKARNYATEFGRSCRNRREKAAWFDCLKLYDDTVIQLNRTLTGLGGNGSRCTDFDAQTWLSSALTNIDMCRSGATDLNVTDFIEPITSGPSRNMSELISNCLAINGGFLEGGRNNTNSTDPAEEMGFPRWVLKSDRKLLQSSKVKADMVVAKDGSGNFRTVQAAVNAAARRRRKSRIVIYVKRGVYRENIEVGSENSNIMLVGDGMRFTFITSGRSVAAGFTTFSSATAGIDGLAFIARDISFINSAGPRMGQAVALRSSSDLSVFHRCAFQGYQDTLLVLSQRQFYKQCYIYGTIDFIFGNAAVVFQNCMIYVRRPLKGQVNVITAQGREDPYQNTGISIHNSQIRAAPDLRPIIGSVKTYLGRPWKKYSRTVIMRSYIDTLVSPVGWLAWQKSKFAQDTLFYGEYKNFGPRASTRSRVRWAGFHVITSPNVASRFTVGKLIAGQTWLPATGVPFTLGL 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42996005 42998538 - evm.model.ptg000004l.256 HCH11g1125 554592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1125 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 188 IPR035513 -
HCH11g1125 542 PANTHER PECTINESTERASE 12 533 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH11g1125 542 Pfam Plant invertase/pectin methylesterase inhibitor 35 186 IPR006501 GO:0004857(InterPro)
HCH11g1125 542 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
HCH11g1125 542 NCBIfam pectinesterase inhibitor domain 6 187 IPR006501 GO:0004857(InterPro)
HCH11g1125 542 CDD PMEI-like_3 38 190 - -
HCH11g1125 542 SMART PMEI_2 31 186 IPR006501 GO:0004857(InterPro)
HCH11g1125 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 189 IPR035513 -
HCH11g1125 542 SUPERFAMILY Pectin lyase-like 225 541 IPR011050 -
HCH11g1125 542 Gene3D - 222 542 IPR012334 -
HCH11g1125 542 FunFam Pectinesterase 223 542 - -
HCH11g1125 542 Pfam Pectinesterase 229 527 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1125 HCH-Chr11:42996005 HCH5g0736 HCH-Chr5:5353497 1.30E-164 dispersed
HCH11g1124 HCH-Chr11:42991513 HCH11g1125 HCH-Chr11:42996005 4.70E-169 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1125 K01051 - csv:101213944 714.916