Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH11g1149 | ATGGAGAGCTTCCAATTGGCTGCAGGAGCAGAAACCCCGAGAGAAATCGACGGTCCTACGGTGGCGGTACCGGTGGATGCTGCTCCACCGGTGAGCGGGGTGGTTTCTGCAATGGAAATGAAGAAGAAGAGGGGGAGGCCAAGGAAGTATGGCCCGGACGAGAAACGGTCGCTGGCATTGTCGCCGATGCCGATATCCTCGTCGATTCCATTGACCGGAGAGTTTCCAAATTGGAAACGGAACAATGAGCTGTCTCTGGAGGTAATCGAGAAGACACAGAGATATGAATATGAGAGTCCTGGTCAGAGAATTGCTTACTCTGTTGGTGCAAATTTCACTCCCCATGTGATCATTGTTAACGCTGGAGAGGATATTATGGTGAAGGTTATGTCATTCTCTCAGCAAGAATCCCGAGCGATTTGTATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTATGGGGGTACCTTAACATATGAGGGTTGTTTTGAGATACTTGCATTGACTGGATCGTTTATGCCCACACATAATGGAGGTACAAAGGGCAGATGTGGTGGGGTAAGTGTCTCACTAGCAGGTCAAGATGGTCGAGTTGTCGGTGGAGGACTTGCTGGTCTGTTGGTAGCTGCTGGTCCTGTACAGGTTGTGGTGGGCAGTTTCCTACCGGGTCACCAGCTGGAACAAAAGCCAAAGAAGCCTAGAAATCAGCCCACAACCATTTTCTTTCCTCCTATCAACACCATCACTGGTGAAGAAATGAAGGCAGCATACAACAGTATCCAGCCAATTCTCACTACAGCGTTCTCTCAAGAACATAATCCCGTGTCGCCAAACCCCGTCATAGGCTTTAAAATATCCTCTACTGACAACTTACTTTTGCCTGAACAAGAACCCAAGGCACGAAATCAATCGAACGGTGAGATTTCTTGTTGA | 954 | 47.8 | MESFQLAAGAETPREIDGPTVAVPVDAAPPVSGVVSAMEMKKKRGRPRKYGPDEKRSLALSPMPISSSIPLTGEFPNWKRNNELSLEVIEKTQRYEYESPGQRIAYSVGANFTPHVIIVNAGEDIMVKVMSFSQQESRAICILSANGTISNVTLRQATSYGGTLTYEGCFEILALTGSFMPTHNGGTKGRCGGVSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQLEQKPKKPRNQPTTIFFPPINTITGEEMKAAYNSIQPILTTAFSQEHNPVSPNPVIGFKISSTDNLLLPEQEPKARNQSNGEISC | 317 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 43720186 | 43723622 | + | evm.model.ptg000004l.232 | HCH11g1149 | 554616 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH11g1149 | 317 | ProSiteProfiles | PPC domain profile profile. | 109 | 251 | IPR005175 | - | |
| HCH11g1149 | 317 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 111 | 239 | - | - | |
| HCH11g1149 | 317 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 33 | 255 | IPR039605 | GO:0003680(InterPro) | |
| HCH11g1149 | 317 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| HCH11g1149 | 317 | CDD | DUF296 | 113 | 227 | IPR005175 | - | |
| HCH11g1149 | 317 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 114 | 227 | IPR005175 | - | |
| HCH11g1149 | 317 | Gene3D | - | 114 | 244 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g1149 | HCH-Chr11:43720186 | HCH4g0865 | HCH-Chr4:5539854 | 1.50E-48 | dispersed | |
| HCH11g1149 | HCH-Chr11:43720186 | HCH13g1201 | HCH-Chr13:39302289 | 2.90E-20 | wgd | |
| HCH11g1149 | HCH-Chr11:43720186 | HCH5g0750 | HCH-Chr5:5464660 | 5.40E-51 | wgd | |
| HCH11g1149 | HCH-Chr11:43720186 | HCH5g0424 | HCH-Chr5:2804270 | 1.60E-66 | wgd | |
| HCH11g1149 | HCH-Chr11:43720186 | HCH6g0969 | HCH-Chr6:44513468 | 1.30E-68 | wgd | |
| HCH11g1149 | HCH-Chr11:43720186 | HCH7g1547 | HCH-Chr7:47928116 | 2.10E-63 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH11g1149 | - | - | - | 0.0 |