Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1158 ATGGAGAGAAGAAGAGGAGGAGGAGAAAGTTCAATTGGATTATGGATTTGTATTGTCGCGGTTTTAATTTGTTCAAAAATCAACGTTTTAGCTAGATCAGATAAGGAAATTCGGGAGAGATTTTATGGAAATTTGATAAATACAACGGCGCCGACTTCCGGCGACGGTAGCATTGCTCAAATGTTCGATAAAGTTCTGGAGAAAGAATTTTCCGATAATGATCTCCGTGAAGGTTCTGAAGGAAGCAGCTTTAATAGCAGTGTTGCTGATCAAGAAGCAGAACTGGAGACAGTAGCTAAAATCACTCACGAGAAGGGCAAGAAAAATGATACTCAAAAAGCGAATGGTACGAGGGCATTCCAATTTCAGGATGTTTTCTCTCTGGAAAATGAGGATTCTGATGATGTCACGACATTGATTGATAAAAAAGACAATGTATTTGTGATGTCAAACAAGAAATCGAAGTATCCTGTGCTTCAAGTAGATTTGAGATTGATTTCAGACTTGGTGGTGGTTATTGTTTCTGCTGCAATTGGTGGCATTATCTTTTCTTGTTTGGGACAACCGGTTATTGTGGGTTATCTTCTCGCGGGGTCACTTATTGGACCAGGAGGTCTTAAATTCATCAGTGAAATGGTTCAGGTTGAAACGGTAGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTTTAGGATTGGAGTTTTCTTTGACAAAGTTAAAAGTTGTGGGGGCTGTCGCTGTTTTCGGAGGTTTTCTACAGATCATCATATTTATATTTTTGTGCGGCATAATTGCTATGTTAAGTGGAGCAAAACTGTCTGAGGGTGTATTTGTTGGTTCCTTTCTATCAATGTCATCAACAGCAGTGGTGGTGAAGTTCTTGGTAGAACGGAATAGTAGTAATGCTCTTCACGGTCAAGTTACCATTGGAACACTTATTTTACAGGATTGTGCTGTTGGTTTATTATTTGCCTTGCTCCCAGTTTTGGGCGGTAACAATGGTCTTCTTTTAGGAATGATATCTATGGGAAAGTTGCTACTGGTGTTGTCTATATATCTGACTGTAGCATCTCTTTTATCATGGTCATTTGTTCCCCGTTTTTTAAAACTGATGGTGCAGCTGTCATCTCAAACAAATGAGCTTTATCAGCTTGCTGCTGTGGCCTTTTGCTTATTGTCTGCTTGGTGCAGTGATAAGCTGGGCCTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGATATCTACCACTGACTTCGGACAACATACTTTAGACCAGGTGGAACCAATCCGTAACTTATTTGCAGCTTTATTCCTTTCAAGTATTGGAATGCTCATTCATGTACATTTCCTGTGGAGCCATTTGGATATTTTGTTAGCTTCTGTTATGCTGGTAGTACTGGTCAAGACCACAGTTGCTACCATTGTGACAAAAGCCTTTGGATACAGTATCAGGACTTCTTTCTTGGTCGGTGTCATGCTTGCTCAAATTGGAGAATTTGCATTTGTTCTCCTAAGCCGTGCTTCAAATCTTCATCTTATTGGGGGGAAAGTATATCTGTTGCTTCTTGGAACAACGGCACTTAGTCTGGTGACCACCCCTCTTCTGTTCAAATTGATACCCGCCGTGATGAATTTGGGTGTTCTCATGCGTTGGTTTCCCCCCGAAAGCAGCGTGCAAAGCGAGGAGAAAGTATCAAAGGTTGAAGCGCTTAACAGAATGTTGTGA 1731 40.79 MERRRGGGESSIGLWICIVAVLICSKINVLARSDKEIRERFYGNLINTTAPTSGDGSIAQMFDKVLEKEFSDNDLREGSEGSSFNSSVADQEAELETVAKITHEKGKKNDTQKANGTRAFQFQDVFSLENEDSDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSLIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFIFLCGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNALHGQVTIGTLILQDCAVGLLFALLPVLGGNNGLLLGMISMGKLLLVLSIYLTVASLLSWSFVPRFLKLMVQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVLVKTTVATIVTKAFGYSIRTSFLVGVMLAQIGEFAFVLLSRASNLHLIGGKVYLLLLGTTALSLVTTPLLFKLIPAVMNLGVLMRWFPPESSVQSEEKVSKVEALNRML 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43800999 43806364 - evm.model.ptg000004l.223 HCH11g1158 554625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1158 576 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 16 568 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
HCH11g1158 576 Gene3D - 163 546 IPR038770 -
HCH11g1158 576 Pfam Sodium/hydrogen exchanger family 173 539 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1158 HCH-Chr11:43800999 HCH8g0658 HCH-Chr8:43354604 1.60E-189 dispersed
HCH11g1158 HCH-Chr11:43800999 HCH4g0540 HCH-Chr4:3508392 2.90E-191 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1158 K26735 - csv:101207607 924.08