Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1169 ATGATGGAAATTTACCGCATAGGCATAATGCCCAACGAAAATGACCGAGATTCGTCCGCGAAATGCCGAGAACGCCGGCGGCGTAGAATAGAGATGAGACGATTGTCGACAGTATCGTCGGCGAATCCGTCAACTAGTCACCATCACCACCATCACCGGAAAGAGAATCAAACGGAGAGCTCCGGTTTCGAGAAGAAACATGAACGGTCGACGGAAGTCGGCGGCTGTGCACCGGAAATTTCTCCGTCTTCGTCATCGGGGGATGATGTCAAGACTATGACAGCGGGTTCACCGTCGGAACCTCAGCCGATGTTCGGGATGATGTCGGTATCGGGGAGGGCACGTGAGATGGAGGATGCTGTATCCGTTAGCACGTGCTTTCTTGTTTCGGAAAGTTCCCGGCGGCAACTGGTTCATTTCTTCGCCGTCTATGATGGACATGGCGGGCCTCATGTGGCAGCACTGTGTAGGGAGAGGATGCACGTGTTGGTACAGGAGGAGCTCACGCGCTTGGTGGAAGCCCCGCGCGAGGAGGGTGAGAGTGGGAGTGGGGATGGAAGTAGCAGCACGGCGGAGGATGAGGCTTATTGGAAAAGAGTGATGCGGCGGAGCTTTGAGAGGATGGATGAGGTGGCGTTGAGTACCTGTGCATGTGGCAGGGTTGGAGGCCAGTGTGGTTGCCACCCTGTGGAGGTGGCTCTCGGCGGCTCCACCGCTGTCGTCGCCGTGCTCACGCTCGATCAGATAATCGTTGCCAATTGCGGCGACTCACGCGCCGTCCTCTCCCGTGGTGGGACGGCAATTCCGCTTTCTAATGATCACAAGCCGGATAGAGTCGATGAACTTGAAAGGATTGAAGCTGCTGGAGGAAGAGTTATTTTTGTCAATGGAGCTCGGGTTGAAGGCATACTTGCGATGTCTCGTGCAATAGGTGACAAGTATCTTAAGTCGGTTGTAATATCAGAGCCAGAAGTTACTTTCACCAGAAGAGAATCTGACGATGAATGCTTAATACTTGCAAGTGATGGTTTGTGGGATGTTCTGTCAAGTGACTTGGCTTGCGAGGTAGCCCGTGAATGTCTTCAACAAGAAGGAGCTCCTCCTGCTGCTGCTGCTGCTATAGATCTCAATGCTGTGCCTCAAATAGATGAAGAAGGGGCTGGAACATTATATCCCACTCGAAGTGGACAAGCTGCTGCTCTACTTACTCGTCTTGCTTTGGGGCGGAAAAGCACCGATAACATCAGTGTTATAGTTGTTGATCTGAAGAGGGGCTGA 1278 52.9 MMEIYRIGIMPNENDRDSSAKCRERRRRRIEMRRLSTVSSANPSTSHHHHHHRKENQTESSGFEKKHERSTEVGGCAPEISPSSSSGDDVKTMTAGSPSEPQPMFGMMSVSGRAREMEDAVSVSTCFLVSESSRRQLVHFFAVYDGHGGPHVAALCRERMHVLVQEELTRLVEAPREEGESGSGDGSSSTAEDEAYWKRVMRRSFERMDEVALSTCACGRVGGQCGCHPVEVALGGSTAVVAVLTLDQIIVANCGDSRAVLSRGGTAIPLSNDHKPDRVDELERIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEVTFTRRESDDECLILASDGLWDVLSSDLACEVARECLQQEGAPPAAAAAIDLNAVPQIDEEGAGTLYPTRSGQAAALLTRLALGRKSTDNISVIVVDLKRG 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43866811 43872168 + evm.model.ptg000004l.212 HCH11g1169 554636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1169 425 MobiDBLite consensus disorder prediction 77 99 - -
HCH11g1169 425 MobiDBLite consensus disorder prediction 1 104 - -
HCH11g1169 425 MobiDBLite consensus disorder prediction 173 193 - -
HCH11g1169 425 Gene3D - 99 425 IPR036457 -
HCH11g1169 425 MobiDBLite consensus disorder prediction 55 73 - -
HCH11g1169 425 ProSiteProfiles PPM-type phosphatase domain profile. 104 422 IPR001932 -
HCH11g1169 425 Pfam Protein phosphatase 2C 105 373 IPR001932 -
HCH11g1169 425 CDD PP2Cc 104 422 IPR001932 -
HCH11g1169 425 SMART PP2C_4 94 420 IPR001932 -
HCH11g1169 425 SUPERFAMILY PP2C-like 100 423 IPR036457 -
HCH11g1169 425 SMART PP2C_SIG_2 121 422 IPR001932 -
HCH11g1169 425 ProSitePatterns PPM-type phosphatase domain signature. 140 148 IPR000222 GO:0043169(InterPro)
HCH11g1169 425 PANTHER PROTEIN PHOSPHATASE 57 421 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH11g1169 425 FunFam Protein phosphatase 2C 50 102 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1169 HCH-Chr11:43866811 HCH13g0506 HCH-Chr13:3551931 4.60E-69 dispersed
HCH11g1169 HCH-Chr11:43866811 HCH3g1399 HCH-Chr3:51941522 1.30E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1169 K14497 - csv:101206634 582.793