Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1176 ATGGGGAGAGGGAAAGTAGTATTGGAGAGAATAGAAAACAAGGTAAATCGGCAAGTAACTTTCTCAAAACGTAGAAATGGATTGCTGAAGAAAGCTTATGAACTCTCTGTGCTTTGTGATGTTGAAGTTGCCCTTATCATCTTCTCCGGCCGTGGAAAACTCTTTGAATTTGGCAGCACTGATATGAACAAGATCCTTGAACGCTACCACCAACGATGTTATAACTCAGCATCAAGTAGCAATCTTGATGAGAATGAAATACAGATGGAGCAAGTGACAAAGTTAAGAGCCAAATATGAATCTCTTCAGCGTTCACAAAGGAACTATCTTGGAGAAGATCTTGAACCACTCAGCCTCAAAGAGTTGCATAATCTTGAGAAACAGTTGGATAAAACTCTCTCTCAAGCTAGGCAGAGAAAGGCAGAGATAATGCTTCAAAGATTAGCTGAGTTGCGCAAAATGGAGCAAGATCTTGGAGAAGAAAATAATCAGCTCAAGTCAAAGCTTGAAGAAGGACAGAGATTGTTGCAACAAATCCAAGCTGGTCAAGGAGAACCAAACATGAGCAAGAGGTACTTTGACGATCAAAATGATGCACAAGAGAATGAGGATGAAGAAACAACAAATATGGGAGGAGGGAATAATAATTTCATCCCAAGTTGGTTGCTATGA 672 40.03 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVEVALIIFSGRGKLFEFGSTDMNKILERYHQRCYNSASSSNLDENEIQMEQVTKLRAKYESLQRSQRNYLGEDLEPLSLKELHNLEKQLDKTLSQARQRKAEIMLQRLAELRKMEQDLGEENNQLKSKLEEGQRLLQQIQAGQGEPNMSKRYFDDQNDAQENEDEETTNMGGGNNNFIPSWLL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44079319 44082656 + evm.model.ptg000004l.205 HCH11g1176 554643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1176 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1176 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1176 223 FunFam MADS-box transcription factor 1 13 85 - -
HCH11g1176 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1176 223 Pfam K-box region 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH11g1176 223 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1176 223 Coils Coil 148 182 - -
HCH11g1176 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1176 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH11g1176 223 Coils Coil 85 105 - -
HCH11g1176 223 Coils Coil 119 142 - -
HCH11g1176 223 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH11g1176 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1176 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1176 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1176 223 MobiDBLite consensus disorder prediction 197 223 - -
HCH11g1176 223 MobiDBLite consensus disorder prediction 206 223 - -
HCH11g1176 223 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH11g1176 223 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1176 HCH-Chr11:44079319 HCH13g1177 HCH-Chr13:38413132 3.80E-51 dispersed
HCH11g1176 HCH-Chr11:44079319 HCH11g1179 HCH-Chr11:44108449 1.40E-32 proximal
HCH11g1176 HCH-Chr11:44079319 HCH13g1176 HCH-Chr13:38373318 5.20E-32 wgd
HCH11g1176 HCH-Chr11:44079319 HCH5g0459 HCH-Chr5:3088096 2.00E-31 wgd
HCH11g1176 HCH-Chr11:44079319 HCH7g1576 HCH-Chr7:48136186 3.20E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32617 PF01486 K-box 6.40E-24 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1176 K09264 - csv:101212022 299.286