Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1179 ATGGTGAGAGGGAAAGTAGAGATGAAACGAATAGAAAATGCAACGAGTAGGCAGATAACTTTCTCAAAGCGTAGAAATGGACTGTTGAAGAAGGCTTATGAGTTATCTGTGCTCTGTGATGCTGAAGTTGCTGTCATCATGTTCTCTCAAAAAGGCAAACTCCATGAATTTGCAAGCTCTGACATGGGGATGATTATGGAACGCTATCGCAAAAGTGCAAGAGATGGGAAGAATCGCAAGATTGTTGACAGGGAGCTCCAATTACAGCTAATAAATAATGAAACTGAAAGCATTAATGGGAGGATTGAGCAGCTACAACTTTCTCAAAGGAAGCTTCTGGGATATGGATTAGATTCATGTTCATTTGAAGAACTTCAAGAGATTGATGCTCAGCTTCAAAGCAGCTTGTACCAAATTAGAGCCAGAAAGGCTGAGCTATATAAAGAGCAGATTCAACAACTCAAAGAAAAGGAAAGACTCCTTTTAGAAGAGAATACAAAATTATCTTTAAAGTCATGGCAGGCAGCAGCCCAGGAAGCTGCAGCACATTGCAGCCAAAAGAGGCCAAATCATTGGGAAGTTGAGACTGAATTGTTCATTGGATTGAAAAGCTCATAG 618 40.29 MVRGKVEMKRIENATSRQITFSKRRNGLLKKAYELSVLCDAEVAVIMFSQKGKLHEFASSDMGMIMERYRKSARDGKNRKIVDRELQLQLINNETESINGRIEQLQLSQRKLLGYGLDSCSFEELQEIDAQLQSSLYQIRARKAELYKEQIQQLKEKERLLLEENTKLSLKSWQAAAQEAAAHCSQKRPNHWEVETELFIGLKSS 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44108449 44114690 - evm.model.ptg000004l.202 HCH11g1179 554646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1179 205 Pfam K-box region 87 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH11g1179 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 FunFam MADS-box transcription factor MADS-MC 13 85 - -
HCH11g1179 205 Coils Coil 137 171 - -
HCH11g1179 205 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH11g1179 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 179 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH11g1179 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH11g1179 205 ProSiteProfiles K-box domain profile. 88 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1179 HCH-Chr11:44108449 HCH5g0768 HCH-Chr5:5694308 2.60E-54 dispersed
HCH11g1176 HCH-Chr11:44079319 HCH11g1179 HCH-Chr11:44108449 1.40E-32 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32618 PF01486 K-box 3.20E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1179 - - - 0.0