Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g1179 | ATGGTGAGAGGGAAAGTAGAGATGAAACGAATAGAAAATGCAACGAGTAGGCAGATAACTTTCTCAAAGCGTAGAAATGGACTGTTGAAGAAGGCTTATGAGTTATCTGTGCTCTGTGATGCTGAAGTTGCTGTCATCATGTTCTCTCAAAAAGGCAAACTCCATGAATTTGCAAGCTCTGACATGGGGATGATTATGGAACGCTATCGCAAAAGTGCAAGAGATGGGAAGAATCGCAAGATTGTTGACAGGGAGCTCCAATTACAGCTAATAAATAATGAAACTGAAAGCATTAATGGGAGGATTGAGCAGCTACAACTTTCTCAAAGGAAGCTTCTGGGATATGGATTAGATTCATGTTCATTTGAAGAACTTCAAGAGATTGATGCTCAGCTTCAAAGCAGCTTGTACCAAATTAGAGCCAGAAAGGCTGAGCTATATAAAGAGCAGATTCAACAACTCAAAGAAAAGGAAAGACTCCTTTTAGAAGAGAATACAAAATTATCTTTAAAGTCATGGCAGGCAGCAGCCCAGGAAGCTGCAGCACATTGCAGCCAAAAGAGGCCAAATCATTGGGAAGTTGAGACTGAATTGTTCATTGGATTGAAAAGCTCATAG | 618 | 40.29 | MVRGKVEMKRIENATSRQITFSKRRNGLLKKAYELSVLCDAEVAVIMFSQKGKLHEFASSDMGMIMERYRKSARDGKNRKIVDRELQLQLINNETESINGRIEQLQLSQRKLLGYGLDSCSFEELQEIDAQLQSSLYQIRARKAELYKEQIQQLKEKERLLLEENTKLSLKSWQAAAQEAAAHCSQKRPNHWEVETELFIGLKSS | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 44108449 | 44114690 | - | evm.model.ptg000004l.202 | HCH11g1179 | 554646 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g1179 | 205 | Pfam | K-box region | 87 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH11g1179 | 205 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
HCH11g1179 | 205 | Coils | Coil | 137 | 171 | - | - | |
HCH11g1179 | 205 | SUPERFAMILY | SRF-like | 3 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
HCH11g1179 | 205 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 179 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH11g1179 | 205 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH11g1179 | 205 | ProSiteProfiles | K-box domain profile. | 88 | 181 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1179 | HCH-Chr11:44108449 | HCH5g0768 | HCH-Chr5:5694308 | 2.60E-54 | dispersed | |
HCH11g1176 | HCH-Chr11:44079319 | HCH11g1179 | HCH-Chr11:44108449 | 1.40E-32 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32618 | PF01486 | K-box | 3.20E-21 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g1179 | - | - | - | 0.0 |