Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g1189 | ATGGGGTTTTTCTCTAATTCATTATATAATTTAAATTTTATTGGGTCTGAAATTTCATCGCCGGAAACTCTAGAATTGTCCAGCTCGGAGAGTAGTTCCTGTCAAAGAACCATTTTTTCCGACGAAGAGGTTATGTTGGCGGCGATGTATCCGAAGAAGAGGGCAGGAAGGAAGAAGTTTAAGGAAACTCGGCATCCGGTTTTTAGAGGAGTTCGCCGGAGAAACGCTGGGAAATGGGTGTGTGAGGTCCGGGAGCCGAATAAGAAGTCGAGGATTTGGCTCGGGACGTTTCCGACGGCGGTTATGGCGGCGCGTGCTCATGATGTGGCGGCGTTGGCGCTGAGAGGTCGCTCGGCTTGTCTAAATTTTGCTGACTCAGCGTGGCGGTTGCCGGTGCCGGCGTCTGCTGATTCGAGGGATATTCAAAAAGCGGCGGCGAAAGCGGCTGAGGCATTTCGGTCTGTTGAGTCGGATGGTTCGTCGGTTGATGATTCGGTATCCGAGAGTGGGACGGCGACGGTGGTGGAGACGGCGGAGACGGCAGAGAGCGGGTTTTACATGGATGAGGAGGCAGTTTTTGGGCTGCCGGGGTTATTAGTGGATATGGCGGCAGGGATGATGTTGCCGCCACCTCAGCATGTGGGGGAGGGACATTGCCGTAATGACATGGATTTTTTTGCTGGCGTGTCATTATGGAGTTATTAG | 705 | 52.48 | MGFFSNSLYNLNFIGSEISSPETLELSSSESSSCQRTIFSDEEVMLAAMYPKKRAGRKKFKETRHPVFRGVRRRNAGKWVCEVREPNKKSRIWLGTFPTAVMAARAHDVAALALRGRSACLNFADSAWRLPVPASADSRDIQKAAAKAAEAFRSVESDGSSVDDSVSESGTATVVETAETAESGFYMDEEAVFGLPGLLVDMAAGMMLPPPQHVGEGHCRNDMDFFAGVSLWSY | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 44189533 | 44190237 | - | evm.model.ptg000004l.192 | HCH11g1189 | 554656 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g1189 | 234 | Gene3D | AP2/ERF domain | 67 | 125 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g1189 | 234 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 26 | 234 | IPR045277 | GO:0003700(InterPro) | |
HCH11g1189 | 234 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677(InterPro) | |
HCH11g1189 | 234 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g1189 | 234 | CDD | AP2 | 68 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g1189 | 234 | SMART | rav1_2 | 67 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g1189 | 234 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 124 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g1189 | 234 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g1189 | 234 | PRINTS | Ethylene responsive element binding protein signature | 90 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g1189 | 234 | FunFam | Ethylene-responsive transcription factor 2 | 66 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1189 | HCH-Chr11:44189533 | HCH9g0513 | HCH-Chr9:3295237 | 6.20E-28 | dispersed | |
HCH11g1189 | HCH-Chr11:44189533 | HCH11g1190 | HCH-Chr11:44199324 | 2.10E-28 | tandem | |
HCH11g1189 | HCH-Chr11:44189533 | HCH5g0774 | HCH-Chr5:5862230 | 1.00E-70 | wgd | |
HCH11g1189 | HCH-Chr11:44189533 | HCH5g0471 | HCH-Chr5:3190079 | 4.00E-51 | wgd | |
HCH11g1189 | HCH-Chr11:44189533 | HCH6g0933 | HCH-Chr6:44141311 | 2.50E-24 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32620 | PF00847 | AP2 | 1.50E-13 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g1189 | - | - | - | 0.0 |