Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1189 ATGGGGTTTTTCTCTAATTCATTATATAATTTAAATTTTATTGGGTCTGAAATTTCATCGCCGGAAACTCTAGAATTGTCCAGCTCGGAGAGTAGTTCCTGTCAAAGAACCATTTTTTCCGACGAAGAGGTTATGTTGGCGGCGATGTATCCGAAGAAGAGGGCAGGAAGGAAGAAGTTTAAGGAAACTCGGCATCCGGTTTTTAGAGGAGTTCGCCGGAGAAACGCTGGGAAATGGGTGTGTGAGGTCCGGGAGCCGAATAAGAAGTCGAGGATTTGGCTCGGGACGTTTCCGACGGCGGTTATGGCGGCGCGTGCTCATGATGTGGCGGCGTTGGCGCTGAGAGGTCGCTCGGCTTGTCTAAATTTTGCTGACTCAGCGTGGCGGTTGCCGGTGCCGGCGTCTGCTGATTCGAGGGATATTCAAAAAGCGGCGGCGAAAGCGGCTGAGGCATTTCGGTCTGTTGAGTCGGATGGTTCGTCGGTTGATGATTCGGTATCCGAGAGTGGGACGGCGACGGTGGTGGAGACGGCGGAGACGGCAGAGAGCGGGTTTTACATGGATGAGGAGGCAGTTTTTGGGCTGCCGGGGTTATTAGTGGATATGGCGGCAGGGATGATGTTGCCGCCACCTCAGCATGTGGGGGAGGGACATTGCCGTAATGACATGGATTTTTTTGCTGGCGTGTCATTATGGAGTTATTAG 705 52.48 MGFFSNSLYNLNFIGSEISSPETLELSSSESSSCQRTIFSDEEVMLAAMYPKKRAGRKKFKETRHPVFRGVRRRNAGKWVCEVREPNKKSRIWLGTFPTAVMAARAHDVAALALRGRSACLNFADSAWRLPVPASADSRDIQKAAAKAAEAFRSVESDGSSVDDSVSESGTATVVETAETAESGFYMDEEAVFGLPGLLVDMAAGMMLPPPQHVGEGHCRNDMDFFAGVSLWSY 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44189533 44190237 - evm.model.ptg000004l.192 HCH11g1189 554656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1189 234 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1189 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 26 234 IPR045277 GO:0003700(InterPro)
HCH11g1189 234 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
HCH11g1189 234 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1189 234 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1189 234 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1189 234 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1189 234 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1189 234 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1189 234 FunFam Ethylene-responsive transcription factor 2 66 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1189 HCH-Chr11:44189533 HCH9g0513 HCH-Chr9:3295237 6.20E-28 dispersed
HCH11g1189 HCH-Chr11:44189533 HCH11g1190 HCH-Chr11:44199324 2.10E-28 tandem
HCH11g1189 HCH-Chr11:44189533 HCH5g0774 HCH-Chr5:5862230 1.00E-70 wgd
HCH11g1189 HCH-Chr11:44189533 HCH5g0471 HCH-Chr5:3190079 4.00E-51 wgd
HCH11g1189 HCH-Chr11:44189533 HCH6g0933 HCH-Chr6:44141311 2.50E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32620 PF00847 AP2 1.50E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1189 - - - 0.0