Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1190 ATGTCTCATATTCCTCCTTCTGCTAACGAGCACGGGTCATCGGTCGATAAAGGTAATTCGCCGTCCCCGTCTCTGATGATTGAGCTTGATAAGGTAATATCTGATCAGCAGGAAGCTCGACCTCCTGCAATAATGGAGTGTTTTTCCCCGAGACGGGTTGGGTCACCTGTCGGGTCGGGGTCGGGCTCTTCGCCGAGGACGGGTCGGCACCCAAAGTATAGAGGGATTCGAAGCCGGAGTGGGAAATGGGTATCGGAGATTCGAGAGCCACGTAAGACTACGCGCATTTGGCTCGGAACTTACCCGACGCCGGAGATGGCAGCCGCTGCATACGATGTCGCGGCGTTGGCGTTGAAAGGTTTGGAGGCTTCTTTGAACTTTCCTAACTCCGTTCTTTCCTATCCGGTGCCGGGGTCTTCGTCGGCTAGTGAAATACGGGCTGCGGCGGCGATTGCGGCAGCAGCATGGCAGCCGAAGTTGGAAGCGGGTGAAAATTCGGATGCGGGTATGGATCGACCTGAATGTGAGTCGTCGTCATCGACTACTCCGGTGACGTCGACGACGACAACAAAGACGACGGCGGAGTTTGTGGATGAAGAAGCTTTCTTGAACATGCCAAATTTGCTAATGGACATGGCGGAGGGAATGCTGGTTAGCCCGCCGCGGATTACATCACCGTCTTCAGACGACTCGCCGGGAAACTCTCAGGGAGATGGATTATGGAGTTATTCTTAA 735 54.42 MSHIPPSANEHGSSVDKGNSPSPSLMIELDKVISDQQEARPPAIMECFSPRRVGSPVGSGSGSSPRTGRHPKYRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGLEASLNFPNSVLSYPVPGSSSASEIRAAAAIAAAAWQPKLEAGENSDAGMDRPECESSSSTTPVTSTTTTKTTAEFVDEEAFLNMPNLLMDMAEGMLVSPPRITSPSSDDSPGNSQGDGLWSYS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44199324 44200058 - evm.model.ptg000004l.191 HCH11g1190 554657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1190 244 MobiDBLite consensus disorder prediction 1 21 - -
HCH11g1190 244 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677(InterPro)
HCH11g1190 244 MobiDBLite consensus disorder prediction 172 193 - -
HCH11g1190 244 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 64 243 IPR045277 GO:0003700(InterPro)
HCH11g1190 244 ProSiteProfiles AP2/ERF domain profile. 72 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1190 244 MobiDBLite consensus disorder prediction 1 77 - -
HCH11g1190 244 MobiDBLite consensus disorder prediction 218 244 - -
HCH11g1190 244 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1190 244 SMART rav1_2 72 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1190 244 MobiDBLite consensus disorder prediction 162 193 - -
HCH11g1190 244 FunFam Ethylene-responsive transcription factor 2 72 129 - -
HCH11g1190 244 MobiDBLite consensus disorder prediction 221 244 - -
HCH11g1190 244 Pfam AP2 domain 71 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g1190 244 CDD AP2 71 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0383 HCH-Chr11:3637559 HCH11g1190 HCH-Chr11:44199324 2.60E-35 dispersed
HCH11g1190 HCH-Chr11:44199324 HCH6g0933 HCH-Chr6:44141311 3.60E-42 dispersed
HCH11g1189 HCH-Chr11:44189533 HCH11g1190 HCH-Chr11:44199324 2.10E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32621 PF00847 AP2 1.90E-11 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1190 - - - 0.0